Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0225 ATGGAGGCCATAGACGTTTCTCATCATGTGGTGCGTTTAGAAGAAGGAGCTTGCCGGAGCACCGTACTCAGTTCCGGCACGAGTGACTTGTCAGATGACGAGCATAGATGCTCGAGTACTGAGTTTGGAGATGAGATTGTTGGGGTGGTGGGTGAGAAAGGGAGGGGATCCTCTGCATCTGTGTGTTCGGTTGATGATGATGATCAGTTGGATCAGGAATGTGGGGTCCAGGAGGTTAAGGTACAGCTGGAAAAAGTCGAGAGGGATTGTAGGATTTGTCATCTCAGCATGGATGCAACGAATCATGAATCCGGGATTCCTATTGAGCTTGGATGTTGCTGTAAGGAGGATTTAGCTGCTGCTCATAAGGAATGTGCTGAAGCTTGGTTCAAGATCAAGGGTAACAAAACGTGCGAGATATGTGGGTCTACTGCCCAGAATGTCTCGGGTGTGAATGAAACAGAGTTGATAGAACAGTGGAACGAGTCTAACAATGCGACAATGGCATCCTCAACAACGACCGCCGCCCCTTCAACAGAGACTCGAAACTTCTGGCAGGGACATCACTTCCTTAATTTCTTGTTAGCTTGTATGGTCTTTGCCTTTGTCATCTCCTGGCTTTTTCACTTCAATGTACCGTCGTAG 645 47.91 MEAIDVSHHVVRLEEGACRSTVLSSGTSDLSDDEHRCSSTEFGDEIVGVVGEKGRGSSASVCSVDDDDQLDQECGVQEVKVQLEKVERDCRICHLSMDATNHESGIPIELGCCCKEDLAAAHKECAEAWFKIKGNKTCEICGSTAQNVSGVNETELIEQWNESNNATMASSTTTAAPSTETRNFWQGHHFLNFLLACMVFAFVISWLFHFNVPS 214
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 957190 959054 + Conep05aG0022900.1 Cone5ag0225 437243
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0225 214 SUPERFAMILY RING/U-box 87 145 - -
Cone5ag0225 214 ProSiteProfiles Zinc finger RING-CH-type profile. 82 148 IPR011016 GO:0008270(InterPro)
Cone5ag0225 214 PANTHER ZINC FINGER, RING-CH-TYPE 33 213 - -
Cone5ag0225 214 SMART ringv_2 89 142 IPR011016 GO:0008270(InterPro)
Cone5ag0225 214 Pfam RING-variant domain 90 141 IPR011016 GO:0008270(InterPro)
Cone5ag0225 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 152 IPR013083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1243 Cone-Chr1:56066039 Cone5ag0225 Cone-Chr5:957190 7.67E-136 wgd
Cone1ag0217 Cone-Chr1:1322891 Cone5ag0225 Cone-Chr5:957190 2.36E-31 wgd
Cone10ag0353 Cone-Chr10:1675430 Cone5ag0225 Cone-Chr5:957190 1.13E-24 wgd
Cone13ag1373 Cone-Chr13:10010431 Cone5ag0225 Cone-Chr5:957190 7.29E-68 wgd
Cone19ag1368 Cone-Chr19:9052368 Cone5ag0225 Cone-Chr5:957190 4.67E-65 wgd
Cone3ag0384 Cone-Chr3:1932798 Cone5ag0225 Cone-Chr5:957190 7.52E-52 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0225 - - - 0.0