Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0241 ATGGCTGAAATTTGTTGTGGACTCGTTGGAGAAAGTTCTGACGCTTCGGCAAAGATTGAGAAACGTCGCCGGAGACAAGATCTCCTTCCGTTCACGCTACTCTCTGATTCCACCATGCCACAGCTCGTCCTTGAGAGTAGCAGGAAGCGCGCAAGGCTCGATCTCCAGCCACGTGAGTGCGGCAACGCCGTTGAAAATAGTTCAGTGAAGGACGTCCAAGACGTCGACGGAGCTGAATCGGAGGGAAATGTACTTTTGCGAGCTAATCCGGCGGTGAATACTATTGACTCTTTGAAGTCTACGCAGGTTGAAGACGAAGGTGATCAGCTGCCTAAATTTGGCGTCACCTCCGTGTGCGGAAGGAGAAGAGACATGGAGGATGCAGTATCAATTCACCCTTACTTCTGCAACCAGAAAGATCGGAATTCGAGTGATATGCACTTTTTTGGCGTGTTCGACGGCCATGGTTGCTCTCATGTTGCCATGAAGTGTAAAGAGCGGTTGCATCATATAGTCAGGGAAGAGCTTGAAGGCGAGGGAGAGACTGTCGAGTGGAAGAGTATGATGGAACGGAGTTTTGCTCGCATGGACATGGAGGTTAAGGAATCAGGCGACGACGACCATGTCAAAAACTCGAACTGCAGGTGCGAATTTCAGACTCCTCAGTGCGACGCTGTTGGATCGACGGCTGTTGCTACTGTTTTAACGCGAGATAAAATCATCGTGTCGAACTGTGGCGATTCCCGGGCAGTTCTTTGCCGGAAAGGCGTTGCCATCCCTCTCTCATCCGATCACAAGCCTGATAGGCCCGACGAATTGGCTCGGATCCAAGAAGCCGGTGGGCGTGTGATCTATTGGGACGGGGCGAGGGTCCTGGGAGTTCTAGCCATGTCCAGAGCGATAGGAGATAACTACCTGAAACCGTTCGTGATCCCTGAACCGGAGGTGGTGATGATGGATCGGACGGCGGAGGACGAGTGTATGATAATAGCGACTGATGGTCTCTGGGACGTGGTCACAAACGATACAGCTTGTAGCGTGGCTCGTATGTGCCTGAGGGCGCAGAAGCCGCGGGCGCCACCCAGGTCGCCTGGGAGTGCTGACGTGGCCGTGGGCCTATGTGATAGTTCTGACAGGGCCTGCTCGGACGCATCCATTCTGCTAACCAAGTTGGCTTTGGCTAGACACAGTACGGACAATGTTAGCGTCGTGGTCGTCGATTTGAAGGGTAATCGGAACTTCAATAGTCTTTCACAGGGAAAAGAATTTGTTTCGTTGCAACCCCTCTTGTAG 1293 52.51 MAEICCGLVGESSDASAKIEKRRRRQDLLPFTLLSDSTMPQLVLESSRKRARLDLQPRECGNAVENSSVKDVQDVDGAESEGNVLLRANPAVNTIDSLKSTQVEDEGDQLPKFGVTSVCGRRRDMEDAVSIHPYFCNQKDRNSSDMHFFGVFDGHGCSHVAMKCKERLHHIVREELEGEGETVEWKSMMERSFARMDMEVKESGDDDHVKNSNCRCEFQTPQCDAVGSTAVATVLTRDKIIVSNCGDSRAVLCRKGVAIPLSSDHKPDRPDELARIQEAGGRVIYWDGARVLGVLAMSRAIGDNYLKPFVIPEPEVVMMDRTAEDECMIIATDGLWDVVTNDTACSVARMCLRAQKPRAPPRSPGSADVAVGLCDSSDRACSDASILLTKLALARHSTDNVSVVVVDLKGNRNFNSLSQGKEFVSLQPLL 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1020716 1023333 - Conep05aG0024600.1 Cone5ag0241 437259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0241 430 SUPERFAMILY PP2C-like 112 410 IPR036457 -
Cone5ag0241 430 CDD PP2Cc 112 408 IPR001932 -
Cone5ag0241 430 PANTHER PROTEIN PHOSPHATASE 93 407 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone5ag0241 430 Pfam Protein phosphatase 2C 113 372 IPR001932 -
Cone5ag0241 430 Gene3D - 107 417 IPR036457 -
Cone5ag0241 430 FunFam Protein phosphatase 2C 50 99 416 - -
Cone5ag0241 430 ProSiteProfiles PPM-type phosphatase domain profile. 112 408 IPR001932 -
Cone5ag0241 430 SMART PP2C_4 102 406 IPR001932 -
Cone5ag0241 430 ProSitePatterns PPM-type phosphatase domain signature. 148 156 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0280 Cone-Chr20:1254286 Cone5ag0241 Cone-Chr5:1020716 2.13E-77 dispersed
Cone5ag0241 Cone-Chr5:1020716 Cone5ag0672 Cone-Chr5:2877495 3.39E-78 dispersed
Cone1ag1257 Cone-Chr1:56127181 Cone5ag0241 Cone-Chr5:1020716 2.92E-269 wgd
Cone1ag0610 Cone-Chr1:5960182 Cone5ag0241 Cone-Chr5:1020716 9.11E-145 wgd
Cone5ag0241 Cone-Chr5:1020716 Cone5ag1121 Cone-Chr5:4987859 7.68E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0241 K14497 - rcu:8287463 473.781