Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0246 ATGGCGAATCCATGGTGGGCTGGAAATGTAGCCATGAGAGGTGGTGTGGACCCCATATCTCCATCTCCTTCCCTCCAGCTTAGAAACCCAGTAGATCAACAGCAGCAACAACAACAACATGGGTCGTCAGGATTGAACCACCCCTTCGTTCTAATCCGAAGAGATCAGGAGACGACTACCGGTAGTAGCAGAAGTAACCCAACCAACTCCGCTACGAGAAAAAGAACCCTAGAAGACGATGAAGTAAGCCAGGAGAACAACCAACCAGTCTCCACTCCCCAAGACAGCATCGAACCGGGCTCCAACAGTGCCAGCTCATCCCGCCGCCCTCGTGGCCGCCCTGCCGGGTCCAAAAACAAGCCCAAACCACCTGTAGTAGTCGCCAAAGAAACCCCAAATTCTCTAAGAAGCCACGTGTTGGAAATCAGCAGTGGGACTGACATTGTAGAGAGCATTGCCACCTTTGCTCAAAGCCGCCATAGAGGAGTCTCGGTCCTTAGCGGCAGCGGCATTGTGACCAATGTTACTTTCCGGCAACCGGCTGCGCCTGGCGGAGTTATCACCCTCCAAGGCAGGTTTGAGATATTGTCTTTGTCCGGAGCTTTCCTGCCCGCCCCGTCCCCACCTGGGGCAAGTGGTCTGACCGTGTATCTTGCTGGTGATCAAGGGCAGGTTGTTGGCGGCACTGTAGTTGGTGCACTCACGGCGTCCGGGCCAGTTATGGTGATTGCAGCCACATTTACGAACGCAACGTTTGAGAGATTGCCGTTTACTGATCCAGATAATGAGGTGGTGGCACACCAAGATGGGATGCGATCTGCTGGGGTGAATACGGGGACTACGGGAAATTCGACGTCTCAGGGAATGAACCAGCAACCTCCAGCTTCTACTACTGCTGCTGCTGTTGCTGTTTCAATGGCTGCACCTATGTACAATTGGGCCTCGAATGAACAGATGTCGACCCATGATGGGTTTTGGGGTACTCCTGCTAGGCCTCCTTCCTCTAACTACTGA 1014 53.65 MANPWWAGNVAMRGGVDPISPSPSLQLRNPVDQQQQQQQHGSSGLNHPFVLIRRDQETTTGSSRSNPTNSATRKRTLEDDEVSQENNQPVSTPQDSIEPGSNSASSSRRPRGRPAGSKNKPKPPVVVAKETPNSLRSHVLEISSGTDIVESIATFAQSRHRGVSVLSGSGIVTNVTFRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPGASGLTVYLAGDQGQVVGGTVVGALTASGPVMVIAATFTNATFERLPFTDPDNEVVAHQDGMRSAGVNTGTTGNSTSQGMNQQPPASTTAAAVAVSMAAPMYNWASNEQMSTHDGFWGTPARPPSSNY 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1041605 1044772 + Conep05aG0025100.1 Cone5ag0246 437264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0246 337 MobiDBLite consensus disorder prediction 273 297 - -
Cone5ag0246 337 MobiDBLite consensus disorder prediction 22 45 - -
Cone5ag0246 337 CDD DUF296 136 220 IPR005175 -
Cone5ag0246 337 ProSiteProfiles PPC domain profile profile. 132 271 IPR005175 -
Cone5ag0246 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 248 IPR005175 -
Cone5ag0246 337 FunFam AT-hook motif nuclear-localized protein 135 263 - -
Cone5ag0246 337 MobiDBLite consensus disorder prediction 83 112 - -
Cone5ag0246 337 Gene3D - 135 267 - -
Cone5ag0246 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 261 - -
Cone5ag0246 337 MobiDBLite consensus disorder prediction 272 297 - -
Cone5ag0246 337 MobiDBLite consensus disorder prediction 53 72 - -
Cone5ag0246 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 67 333 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone5ag0246 337 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0246 Cone-Chr5:1041605 Cone9ag0727 Cone-Chr9:3470444 8.63E-72 dispersed
Cone1ag1260 Cone-Chr1:56147160 Cone5ag0246 Cone-Chr5:1041605 1.11E-205 wgd
Cone11ag1145 Cone-Chr11:8815268 Cone5ag0246 Cone-Chr5:1041605 3.95E-52 wgd
Cone18ag0437 Cone-Chr18:2129411 Cone5ag0246 Cone-Chr5:1041605 8.86E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0246 - - - 0.0