Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0258 ATGGTCATGGATCGATCTAGTCTGGGTGAATTCTATGGCAGTACTAATGGATTCAATCTTGGGGAAGAAACTCTTTCTACCTTAATGGACCATAATACTCTTGTTGATCGGGTGAAAGCCGAGGATCTTATTCCTTCGCCGCCGAATCCGATCCCTAGTGATGTAGATTCCCACGAGGACTTTAATCTTAGCGATGTAGTTTTCAAGTACATTAATCAGATGCTTATGGAAGAGGATATAGAAGAGAAGGCATGCATGTTTCAGGAATCTGCTGCTTTACAAGCTGCAGAGAGGTCATTTTACGAGCTTCTTGGTGACAAGTCTTCTGCTCCAGCTGATAATATTAATCAGAGCCATGAGATTCTTCATAAAACTAGTCCAACTAGTGATGATTTAGCCGATCCAGGGAGAAGTTCTGAAATGGTTGAGTCCAAAATCTCTTCATGTACTCCTTGGTCTACTTCTTCCTCATCCCATAGCTTGTCAAGTGGAACTGATACTAGCATTGCAGATTCACCTATAAGTACTCTTAACATCCCTGATAGATTTTTCGATAGTGACTCCGTTATGCAATTCAAACGGGGTTTTGAGGAAGCAAGCAAATTCATTCCCCATGGGAATAATCTCTTTCTCGACTTGAAAGAAAGCCATGGCCTTATTAAAGATATGAAGAAAGTGACAGTTACTACCACTAATGGGTCAAGAGGGAAGAAGAATCCTCATCCTGAAGAAGAAGTTGATTTAGATGATGGACGGAGTTACAAGCAGACTTCAATTTGTACGGAATCACCTGTTAGATCGGAATTGTTTGATACCATACTCTTAAGCTGTGGAAGAAACAGTGAATCGGAACTTAGAGAAGCTTTCCAGAATGGGATGAGGAAGAATGAAGAGAGAAGCGTCCAGTCAAAGGAATTATCTATTGGTAGCAAATCCAAGAGTAATAGAAAGAAAGGAGGGAAGAGCGATGTTGTAGATTTAAGAACTCTTTTAACTCTCTGTGCTCAAGCCACTGCATCAAATGATCGTAGAAATGCAAATGAGCTGCTGTATCAGATCCGAACCCATGCTTCCCCTACAGGAGATGGAATGCAGAGAATAGCTTATTATTTCGCAAATGGGCTTGAGGCCCGTTTAGCCGGGTCCGGAACCGAAATCTACACGGCTCTTATAACCAAGCCCACATCTGCTGTAGATGTACTAAAAGCTTACCAGCTATTTCTTGCCGTTTGCCCTTTCAGAAAAATATCCAACTTTTTCACGAACAAGACGATCATGAAAGCAGCGGAGAAAGCAACAACCCTCCACATCATCGATTTTGGTATTCTTTACGGTTTCCAATGGCCATGTCTGATCCAACGACTCGCATCCAGACCTGGTGGGCCCCCCAAAAAGCTTCGCATCACAGGAATCGATTTTCCCCACCCAGGTTTTAGACCGGCCAGACGGGTCGCTGAAACAGGTTGTCGTTTAGCAAACTATGCCGAGACTTTTAATGTTCCTTTTGAATTCAATGCAATAGCAAAAAAATGGGACACTGTTACAATTGAAGATCTTAAACTGAATAATAATGATGAGCTGCTTGTCGTAAACTGTCTGTTTCGATTTAGAAACCTGCTTGATGAGACAGTTGTGGCAGAAAGTCCGAGGGATACTGTTCTGAAACTGATAAGGGAAACTAAACCGGATGTTTTTATACAGGGGATTGTGAATGGGGCGTATAATGCGCCATTTTTTATAACGAGGTTTAGAGAAGCTCTGTTTCATTACTCTGCTTTGTTTGATATGCTTGAAGCTACGACCCCACGTGAGATTCTGGAAAGAATGCTGATAGAGAAGGATTTATTTGGATGGGAGGCAATGAACGTTATAGCTTGCGAGGGGTCAGAGAGGATTGAAAGGCCAGAGACATATAAACAATGGCAGGTGAGGAATCTCAGAGCAGGGTTTAAGCAGCTTCCTCTGGATAGGGAGATTGTTAAGATTGCAATGGATAGGGTTGAGAATTGCTATCATAAGGATTTTGTGATCGATGAAGATGGAGAGTGGTTGATGCAGGGATGGAAAGGGAGGATTGTTTACGGACTCTCATCATGGAGGTGGTAG 2106 42.4 MVMDRSSLGEFYGSTNGFNLGEETLSTLMDHNTLVDRVKAEDLIPSPPNPIPSDVDSHEDFNLSDVVFKYINQMLMEEDIEEKACMFQESAALQAAERSFYELLGDKSSAPADNINQSHEILHKTSPTSDDLADPGRSSEMVESKISSCTPWSTSSSSHSLSSGTDTSIADSPISTLNIPDRFFDSDSVMQFKRGFEEASKFIPHGNNLFLDLKESHGLIKDMKKVTVTTTNGSRGKKNPHPEEEVDLDDGRSYKQTSICTESPVRSELFDTILLSCGRNSESELREAFQNGMRKNEERSVQSKELSIGSKSKSNRKKGGKSDVVDLRTLLTLCAQATASNDRRNANELLYQIRTHASPTGDGMQRIAYYFANGLEARLAGSGTEIYTALITKPTSAVDVLKAYQLFLAVCPFRKISNFFTNKTIMKAAEKATTLHIIDFGILYGFQWPCLIQRLASRPGGPPKKLRITGIDFPHPGFRPARRVAETGCRLANYAETFNVPFEFNAIAKKWDTVTIEDLKLNNNDELLVVNCLFRFRNLLDETVVAESPRDTVLKLIRETKPDVFIQGIVNGAYNAPFFITRFREALFHYSALFDMLEATTPREILERMLIEKDLFGWEAMNVIACEGSERIERPETYKQWQVRNLRAGFKQLPLDREIVKIAMDRVENCYHKDFVIDEDGEWLMQGWKGRIVYGLSSWRW 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1097559 1100262 - Conep05aG0026400.1 Cone5ag0258 437276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0258 701 MobiDBLite consensus disorder prediction 119 173 - -
Cone5ag0258 701 MobiDBLite consensus disorder prediction 288 321 - -
Cone5ag0258 701 MobiDBLite consensus disorder prediction 229 251 - -
Cone5ag0258 701 ProSiteProfiles GRAS family profile. 318 700 IPR005202 -
Cone5ag0258 701 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 305 699 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone5ag0258 701 MobiDBLite consensus disorder prediction 237 251 - -
Cone5ag0258 701 Pfam GRAS domain family 327 700 IPR005202 -
Cone5ag0258 701 MobiDBLite consensus disorder prediction 141 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0258 Cone-Chr5:1097559 Cone5ag1135 Cone-Chr5:5091380 2.22E-177 dispersed
Cone1ag1271 Cone-Chr1:56198858 Cone5ag0258 Cone-Chr5:1097559 0 wgd
Cone1ag0629 Cone-Chr1:6095291 Cone5ag0258 Cone-Chr5:1097559 1.64E-160 wgd
Cone10ag0315 Cone-Chr10:1500281 Cone5ag0258 Cone-Chr5:1097559 5.82E-217 wgd
Cone13ag1347 Cone-Chr13:9890450 Cone5ag0258 Cone-Chr5:1097559 5.91E-33 wgd
Cone19ag1332 Cone-Chr19:8911519 Cone5ag0258 Cone-Chr5:1097559 1.46E-222 wgd
Cone3ag0346 Cone-Chr3:1764971 Cone5ag0258 Cone-Chr5:1097559 6.10E-17 wgd
Cone4ag1048 Cone-Chr4:9129371 Cone5ag0258 Cone-Chr5:1097559 1.70E-165 wgd
Cone5ag0258 Cone-Chr5:1097559 Cone5ag1134 Cone-Chr5:5088153 1.31E-183 wgd
Cone5ag0258 Cone-Chr5:1097559 Cone7ag1079 Cone-Chr7:8200464 1.41E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46108 PF07011 Elf4 9.90E-40 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0258 K27753 - cit:102621708 827.009