Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0260 ATGCCTATCCTCGCCATTTTAAACTTGGTAGCATTTTTTACCCTTGCTGTTGTGCAAGCCAGAAGCCCTAGAGTTAACTCCGGTCAGCCATGGCAGACCGCCCATGCCACCTTCTATGGCGGCAGTGACGCCTCTGGAACAATGGGAGGAGCATGTGGTTATGGAAACTTATACAGCCAAGGCTACGGCGTGAATACAGCAGCTCTAAGCACTGCGCTCTTCAACAATGGCGCCACGTGCGGAGCATGCTTCGAGCTCAAGTGCTATAACGACCCACAATGGTGCCTCCCTGGTAGCCCTTCCATCTTCTTAACTGCCACCAACTTCTGTCCTCCGAACCACGATCTTCCCAGCGACGATGGCGGCTGGTGCAACCCTCCTCGGACCCACTTCGATCTTGCCATGCCCATGTTCCTCAAAATCGCGGAATATCGGGCCGGAATCGTACCCGTCTCTTATCGCCGGGTGCCATGTCAGAAAAATGGCGGGATCAGGTTTACGATCAACGGTTTCAGGTACTTCAATTTGGTTTTGATCTCGAACGTGGCAGGTGCAGGGGATATAGTGAGGGTGAGCATTAAGGGGTCGAAGACAGGGTGGATGAGTATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACACCATTTTGGTTGGTCAGTCACTCTCGTTTAGCGTCACAGCAAGTGACCGCCGCTCCTCCACTTCATGGAACATTGTCCCGTCAGATTGGCAGTTCGGTCAGACTTTCACCGGAAGCAATTTCATGATCTAA 774 52.45 MPILAILNLVAFFTLAVVQARSPRVNSGQPWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGATCGACFELKCYNDPQWCLPGSPSIFLTATNFCPPNHDLPSDDGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCQKNGGIRFTINGFRYFNLVLISNVAGAGDIVRVSIKGSKTGWMSMSRNWGQNWQSNTILVGQSLSFSVTASDRRSSTSWNIVPSDWQFGQTFTGSNFMI 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1106128 1107079 + Conep05aG0026600.1 Cone5ag0260 437278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0260 257 PANTHER EXPANSIN-A15 12 255 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cone5ag0260 257 Gene3D - 160 255 IPR036749 -
Cone5ag0260 257 SUPERFAMILY Barwin-like endoglucanases 13 181 IPR036908 -
Cone5ag0260 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Cone5ag0260 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cone5ag0260 257 SMART dpbb_1 66 153 IPR007112 -
Cone5ag0260 257 FunFam Expansin 20 159 - -
Cone5ag0260 257 CDD DPBB_EXPA_N 30 158 - -
Cone5ag0260 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cone5ag0260 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Cone5ag0260 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cone5ag0260 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Cone5ag0260 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Cone5ag0260 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Cone5ag0260 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Cone5ag0260 257 Gene3D - 15 159 IPR036908 -
Cone5ag0260 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cone5ag0260 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cone5ag0260 257 FunFam Expansin 163 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0239 Cone-Chr3:1278015 Cone5ag0260 Cone-Chr5:1106128 3.62E-110 dispersed
Cone3ag0240 Cone-Chr3:1280462 Cone5ag0260 Cone-Chr5:1106128 7.55E-114 dispersed
Cone5ag0260 Cone-Chr5:1106128 Cone9ag0581 Cone-Chr9:2741577 1.21E-126 dispersed
Cone1ag1273 Cone-Chr1:56207894 Cone5ag0260 Cone-Chr5:1106128 3.30E-181 wgd
Cone1ag0635 Cone-Chr1:6129085 Cone5ag0260 Cone-Chr5:1106128 1.75E-156 wgd
Cone10ag0314 Cone-Chr10:1493173 Cone5ag0260 Cone-Chr5:1106128 1.20E-149 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone5ag0260 Cone-Chr5:1106128 5.86E-157 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone5ag0260 Cone-Chr5:1106128 6.34E-157 wgd
Cone3ag0344 Cone-Chr3:1750135 Cone5ag0260 Cone-Chr5:1106128 8.57E-143 wgd
Cone4ag1056 Cone-Chr4:9198068 Cone5ag0260 Cone-Chr5:1106128 5.32E-151 wgd
Cone5ag0260 Cone-Chr5:1106128 Cone5ag1140 Cone-Chr5:5119294 7.37E-158 wgd
Cone5ag0260 Cone-Chr5:1106128 Cone7ag1075 Cone-Chr7:8181630 1.10E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0260 - - - 0.0