Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0270 ATGGTTTTCTCATCTATTCCCGTCTATCTGGATCCACCCAACTGGACACAACAGCAAGCAGAACCACCCGGAGTTGTGCTCGGAAACGGTGCTCATCATGATGATCAGGGCATCAACCCTCAGCTCCTACCTTCAGTATCAGCTGGAGGCGGCCCAGGTGGGAACTCAAATATTAGGCTCGGTTCAATGACCGATCGAGCCCGGCTGGCAAAGATTCCTCAACCGGAAGCGGCCCTAAAATGTCCGAGATGTGAATCGACGAACACCAAGTTCTGTTACTTCAACAACTACAGTCTGACTCAGCCACGTCACTTCTGCAAGACTTGCCGCCGTTACTGGACCCGAGGGGGTGCACTTCGGAATGTTCCGGTAGGTGGAGGTTGTAGGAGAAACAAACGATCAAGCAAGAGTCGATCGAGTAGATCAAAATCTCCAGCTATTGATCATCATGTACTACCCCAGGCTGCTCATCATGGCGGTTCAACCTCTACAAATACGGATTCTTCTAATGGCTGCGCGGCCGATCCTCATGTTATTGGCTATTTTGACCCTACAGCATCACCTCAATTACCTTTTCTCCCCTCTTTACATCACCTAAGTAGTAGTGATTACGGTTTCAATTTTGCGGGATTGAGTAGTAATCAGCCCCAAGTTTTAGCGACGATCGCGCAAGGTACTGGTCCGGGGAATATACCGGAGCAGTTGAGATTGAATCAAGTGCAGCAGTTTTCATTCTTGACTAATTTGGAACCGCCTTGCGTTTCTGGTTTATGTACGTTCGATCAAGGTGTTAATCGTGTCTGTAACATGTCTAAGCCGTTTGATAATAGTGGTGCTATAGTAAAAATGGAGGAGAATCGGAGGCATCATGATTTGTCAAGGAAATTCATGGGTGGTCAAGGAAATGGAACTCATGATGATGATCATCAATTTAATTGGAGCGAGGGAAATCATGCATGGAATGATCTTTCTGGTTTCAATTCTTCGAGTTCAAGTCATCTCTTGTGA 1008 46.73 MVFSSIPVYLDPPNWTQQQAEPPGVVLGNGAHHDDQGINPQLLPSVSAGGGPGGNSNIRLGSMTDRARLAKIPQPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKSRSSRSKSPAIDHHVLPQAAHHGGSTSTNTDSSNGCAADPHVIGYFDPTASPQLPFLPSLHHLSSSDYGFNFAGLSSNQPQVLATIAQGTGPGNIPEQLRLNQVQQFSFLTNLEPPCVSGLCTFDQGVNRVCNMSKPFDNSGAIVKMEENRRHHDLSRKFMGGQGNGTHDDDHQFNWSEGNHAWNDLSGFNSSSSSHLL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1144528 1146245 - Conep05aG0027800.1 Cone5ag0270 437288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0270 335 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag0270 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 66 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0270 335 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag0270 335 MobiDBLite consensus disorder prediction 123 170 - -
Cone5ag0270 335 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0270 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0700 Cone-Chr1:6521195 Cone5ag0270 Cone-Chr5:1144528 9.53E-34 dispersed
Cone5ag0270 Cone-Chr5:1144528 Cone5ag1208 Cone-Chr5:5520489 1.09E-33 dispersed
Cone20ag0393 Cone-Chr20:1902356 Cone5ag0270 Cone-Chr5:1144528 1.49E-30 transposed
Cone1ag1284 Cone-Chr1:56242528 Cone5ag0270 Cone-Chr5:1144528 4.83E-200 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone5ag0270 Cone-Chr5:1144528 2.65E-57 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone5ag0270 Cone-Chr5:1144528 3.66E-48 wgd
Cone13ag1337 Cone-Chr13:9841457 Cone5ag0270 Cone-Chr5:1144528 2.69E-54 wgd
Cone19ag1320 Cone-Chr19:8863235 Cone5ag0270 Cone-Chr5:1144528 1.12E-55 wgd
Cone3ag0333 Cone-Chr3:1692917 Cone5ag0270 Cone-Chr5:1144528 1.48E-51 wgd
Cone5ag0270 Cone-Chr5:1144528 Cone5ag1158 Cone-Chr5:5209015 1.64E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.3e-42 170.2
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT1G29160 56.5 1.7e-42 169.9
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT2G34140 53.9 6.3e-42 167.9
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT2G34140 55.7 2.4e-41 166.0
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 59.7 1.0e-40 164.9
Cone3ag0333 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 60.8 1.5e-39 161.0
Cone10ag0305 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 60.3 8.1e-38 155.2
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 56.7 9.0e-37 151.8
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 57.4 9.0e-37 151.8
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 58.2 9.5e-41 165.2
Cone1ag1284 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 56.3 3.1e-39 160.2
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 58.5 2.0e-38 157.5
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 55.1 3.7e-37 153.3
Cone6ag1371 . 22 230 C2C2-Dof Transcription Factor Family AT3G50410 50.2 2.7e-49 193.0
Cone5ag0270 . 54 248 C2C2-Dof Transcription Factor Family AT3G55370 50.7 1.4e-41 167.9
Cone19ag0032 . 27 307 C2C2-Dof Transcription Factor Family AT5G60850 50.7 3.6e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46109 PF09258 Glyco_transf_64 1.40E-76 CL0110 Cone TF