Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0270 ATGGTTTTCTCATCTATTCCCGTCTATCTGGATCCACCCAACTGGACACAACAGCAAGCAGAACCACCCGGAGTTGTGCTCGGAAACGGTGCTCATCATGATGATCAGGGCATCAACCCTCAGCTCCTACCTTCAGTATCAGCTGGAGGCGGCCCAGGTGGGAACTCAAATATTAGGCTCGGTTCAATGACCGATCGAGCCCGGCTGGCAAAGATTCCTCAACCGGAAGCGGCCCTAAAATGTCCGAGATGTGAATCGACGAACACCAAGTTCTGTTACTTCAACAACTACAGTCTGACTCAGCCACGTCACTTCTGCAAGACTTGCCGCCGTTACTGGACCCGAGGGGGTGCACTTCGGAATGTTCCGGTAGGTGGAGGTTGTAGGAGAAACAAACGATCAAGCAAGAGTCGATCGAGTAGATCAAAATCTCCAGCTATTGATCATCATGTACTACCCCAGGCTGCTCATCATGGCGGTTCAACCTCTACAAATACGGATTCTTCTAATGGCTGCGCGGCCGATCCTCATGTTATTGGCTATTTTGACCCTACAGCATCACCTCAATTACCTTTTCTCCCCTCTTTACATCACCTAAGTAGTAGTGATTACGGTTTCAATTTTGCGGGATTGAGTAGTAATCAGCCCCAAGTTTTAGCGACGATCGCGCAAGGTACTGGTCCGGGGAATATACCGGAGCAGTTGAGATTGAATCAAGTGCAGCAGTTTTCATTCTTGACTAATTTGGAACCGCCTTGCGTTTCTGGTTTATGTACGTTCGATCAAGGTGTTAATCGTGTCTGTAACATGTCTAAGCCGTTTGATAATAGTGGTGCTATAGTAAAAATGGAGGAGAATCGGAGGCATCATGATTTGTCAAGGAAATTCATGGGTGGTCAAGGAAATGGAACTCATGATGATGATCATCAATTTAATTGGAGCGAGGGAAATCATGCATGGAATGATCTTTCTGGTTTCAATTCTTCGAGTTCAAGTCATCTCTTGTGA 1008 46.73 MVFSSIPVYLDPPNWTQQQAEPPGVVLGNGAHHDDQGINPQLLPSVSAGGGPGGNSNIRLGSMTDRARLAKIPQPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKSRSSRSKSPAIDHHVLPQAAHHGGSTSTNTDSSNGCAADPHVIGYFDPTASPQLPFLPSLHHLSSSDYGFNFAGLSSNQPQVLATIAQGTGPGNIPEQLRLNQVQQFSFLTNLEPPCVSGLCTFDQGVNRVCNMSKPFDNSGAIVKMEENRRHHDLSRKFMGGQGNGTHDDDHQFNWSEGNHAWNDLSGFNSSSSSHLL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1144528 1146245 - Conep05aG0027800.1 Cone5ag0270 437288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0270 335 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag0270 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 66 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0270 335 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag0270 335 MobiDBLite consensus disorder prediction 123 170 - -
Cone5ag0270 335 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0700 Cone-Chr1:6521195 Cone5ag0270 Cone-Chr5:1144528 9.53E-34 dispersed
Cone5ag0270 Cone-Chr5:1144528 Cone5ag1208 Cone-Chr5:5520489 1.09E-33 dispersed
Cone20ag0393 Cone-Chr20:1902356 Cone5ag0270 Cone-Chr5:1144528 1.49E-30 transposed
Cone1ag1284 Cone-Chr1:56242528 Cone5ag0270 Cone-Chr5:1144528 4.83E-200 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone5ag0270 Cone-Chr5:1144528 2.65E-57 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone5ag0270 Cone-Chr5:1144528 3.66E-48 wgd
Cone13ag1337 Cone-Chr13:9841457 Cone5ag0270 Cone-Chr5:1144528 2.69E-54 wgd
Cone19ag1320 Cone-Chr19:8863235 Cone5ag0270 Cone-Chr5:1144528 1.12E-55 wgd
Cone3ag0333 Cone-Chr3:1692917 Cone5ag0270 Cone-Chr5:1144528 1.48E-51 wgd
Cone5ag0270 Cone-Chr5:1144528 Cone5ag1158 Cone-Chr5:5209015 1.64E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46109 PF09258 Glyco_transf_64 1.40E-76 CL0110 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0270 - - - 0.0