Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0273 ATGGAAAATGAAGATATGGCTGATAAGCTGGAATGCATACAGAAGATATGCAATAATATTGTGGAATGCACAAACCAGTATTCATTTGCAAAAATGGATGATCAACAAGTCTATTCTCTTATGAGGCTCCGGGAATTATCCAATCGCGCTATTATTGGTCAAGACACAAGGGTGACAGAGAATGACCTGACTAGCACTCTGCGATTTTATATTAACAGGATGGGAAGCAGATGCAAGGCAATTCTTGAAGTTGTAGTTATGATCTCGGATGATGGCTTAGATGAGAAGCAAATGCACTTGCTGCAGAAATTGAAGGAACTCTTATGTGGGATTATAAAAGATGCAAAAATGGAACCTTCTATTCCTGATGAATATGTAGATCCATGGTTTTTAGAGTACCCAAAGGTTGAAGAAGAAGCAACATACACCATGAGCGAGGATATTCGGTTTCAAGTGGAACAGAGTATGCTGGACCTAATTGTTCAAGAAGAAGATTTAGAGGTTGGAGATATGTTAATAAGAAATAACAACAATCAGATATCACATATTCTCAACTCAGTTACTTGGCCTGAAAACGGCTCCATAACCTTGGAGTGGGTTTTGGACTTGATGCACATCCTTGAGCAATCTTCATGGAAAAGCTCGTCCTCTGAGTTTCAACTTGTCATGCCCTTTTATGTGGTGAATAAACTTCTTGACACAGTTGCAAGTATTTTACACAAGGAACCAAATTGTGTTGAAATTACTTGCCATGAAGAGGGTTCAAAAGTTATTGTAGTAGGCGATATTCATGGACAATATCATGACTTACTTCATCTCTTTGAACTCGCTAACTACCCATCTGAGAACCAGTTTTATGTTTTCAATGGAGATTATGTAGATAGAGGAGCTTGGGGATTGGAGGTTTTTCTGGTCTTGTCAGCTTGGAAGGTGTTGAAACCTGATAGGGTATTTATACTACGTGGAAGTCATGAATCAGGACATTGTACATCAGCATATGGTTTTGAGAAAGAGGTAAGGACCAAACTTGGTGAGCAAGGCAAACAAGTATATAACAAGTGCTTGGAAACCTTTAAAGAGCTTCCATTGGCCTCAATTGTAGCTGGGAAAGTATATATTACTCATGGAGGGCTCTTCCGAAAGAGGTCCTCTACCCCTTTGCAAAGTCCCAGGAGAAAGAAGATACGGAATCTAGAAGTTGGTTCATTGGATGACTTGTTTGAGATTGAGCGGTATCTTGTAGATGCTCCCACTTCAGATGATGATTCAAATATATTGTTGACTGATATATTATGGTCTGATCCATCAATTAAAGATGGTCTAAGGAGAAACATAGATCAAGCAGTTGGGCTACAATGGGGCCCTGATTGCACAGAGGCCTTCTTGAAGCAATCTAAGTTGAAGGTGAGTATAAGATCACACGAAGGACCAGATGAAAGGGACGGCCAAGATGTTTTTGGTGATATGTTAAGTGGGTATAGCACAGGTCATGATGGAGAATCTGGGAAGCTATTTACTCTGTCCAGTGCTCCAGATTACCCACAGTTTAGTAAGAAGAGGTACAAAAATGAAGGTGCTTATGCTGTATTGGAACCTCCTAATTTTGAAAATCCTTCTTTCTGCACCTTTGAAGCTGTAGATAGGCCAAAGATAGATGCATATTTTAGTGATGAAGAAGATGAATCAACGTCAGGGGATCAAGACTTGCCATTGACGGACGAACAAGCCACTTCTGTTAGTAGATCTTCAACTGAAGAGTCCAATCCAGCTAGACCAAATCCCGAGGTTAACTTTGAGGCGTTGGGTATTGAAAATCCACCTCCATGGAGTATTACATTAACAGACGATGAAGATGGGCCCCAGGTCATTGAAATTCCAAGGTCTTCTGAGGTAGAGGGATTGCCTCTGCCCACCAACTTAGAGGAGCCTCACAAGGCTGCTTACGTGTACTTTTTGGAGCTTATTGGCGGACTAAAGCTTATGCTGCAAAACCGGGTGAGCTAG 2004 40.87 MENEDMADKLECIQKICNNIVECTNQYSFAKMDDQQVYSLMRLRELSNRAIIGQDTRVTENDLTSTLRFYINRMGSRCKAILEVVVMISDDGLDEKQMHLLQKLKELLCGIIKDAKMEPSIPDEYVDPWFLEYPKVEEEATYTMSEDIRFQVEQSMLDLIVQEEDLEVGDMLIRNNNNQISHILNSVTWPENGSITLEWVLDLMHILEQSSWKSSSSEFQLVMPFYVVNKLLDTVASILHKEPNCVEITCHEEGSKVIVVGDIHGQYHDLLHLFELANYPSENQFYVFNGDYVDRGAWGLEVFLVLSAWKVLKPDRVFILRGSHESGHCTSAYGFEKEVRTKLGEQGKQVYNKCLETFKELPLASIVAGKVYITHGGLFRKRSSTPLQSPRRKKIRNLEVGSLDDLFEIERYLVDAPTSDDDSNILLTDILWSDPSIKDGLRRNIDQAVGLQWGPDCTEAFLKQSKLKVSIRSHEGPDERDGQDVFGDMLSGYSTGHDGESGKLFTLSSAPDYPQFSKKRYKNEGAYAVLEPPNFENPSFCTFEAVDRPKIDAYFSDEEDESTSGDQDLPLTDEQATSVSRSSTEESNPARPNPEVNFEALGIENPPPWSITLTDDEDGPQVIEIPRSSEVEGLPLPTNLEEPHKAAYVYFLELIGGLKLMLQNRVS 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1156254 1160261 + Conep05aG0028100.1 Cone5ag0273 437291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0273 667 SUPERFAMILY Metallo-dependent phosphatases 189 555 IPR029052 -
Cone5ag0273 667 MobiDBLite consensus disorder prediction 557 597 - -
Cone5ag0273 667 Gene3D - 194 587 IPR029052 -
Cone5ag0273 667 PRINTS Serine/threonine phosphatase family signature 256 283 IPR006186 GO:0016787(InterPro)
Cone5ag0273 667 PRINTS Serine/threonine phosphatase family signature 356 382 IPR006186 GO:0016787(InterPro)
Cone5ag0273 667 PRINTS Serine/threonine phosphatase family signature 286 313 IPR006186 GO:0016787(InterPro)
Cone5ag0273 667 PRINTS Serine/threonine phosphatase family signature 409 436 IPR006186 GO:0016787(InterPro)
Cone5ag0273 667 PRINTS Serine/threonine phosphatase family signature 503 519 IPR006186 GO:0016787(InterPro)
Cone5ag0273 667 PRINTS Serine/threonine phosphatase family signature 319 343 IPR006186 GO:0016787(InterPro)
Cone5ag0273 667 Pfam Calcineurin-like phosphoesterase 256 475 IPR004843 GO:0016787(InterPro)
Cone5ag0273 667 MobiDBLite consensus disorder prediction 568 591 - -
Cone5ag0273 667 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 168 557 IPR051134 -
Cone5ag0273 667 SMART pp2a_7 223 547 IPR006186 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0273 Cone-Chr5:1156254 Cone8ag0921 Cone-Chr8:8891620 1.00E-125 dispersed
Cone1ag1287 Cone-Chr1:56254101 Cone5ag0273 Cone-Chr5:1156254 0 wgd
Cone11ag1125 Cone-Chr11:8710754 Cone5ag0273 Cone-Chr5:1156254 1.94E-275 wgd
Cone18ag0453 Cone-Chr18:2207524 Cone5ag0273 Cone-Chr5:1156254 4.94E-278 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0273 K04460 - csv:101211172 749.969