Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0274 ATGGCCGGAAAAGGAGAGGGACCTGCCATCGGTATCGATCTCGGAACTACCTACTCTTGTGTGGGAGTATGGCAGCACGATCGGGTGGAGATCATAGCCAACGACCAGGGCAACCGAACGACGCCGTCTTACGTCGGTTTCACTGACACTGAGCGTTTAATCGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCTATCAACACTGTTTTCGATGCAAAGCGGTTGATTGGTAGGAGATTTAGTGATGCATCAGTCCAGAGTGATATCAAGCACTGGCCATTCAAGGTGATTCCCGGTCCTGCTGATAAGCCGATGATTGTTGTCAACTACAGGGGTGAGGAGAAGCAGTTCGCTGCCGAGGAAATCTCTTCTATGGTTCTAATTAAAATGAAGGAGATTGCCGAGGCTTTTCTTGGCTCATCTGTGAAGAACGCTGTTGTCACTGTCCCTGCATACTTCAACGATTCTCAGCGACAGGCAACTAAGGATGCTGGAGTCATTTCTGGCCTCAATGTCATGCGTATCATCAATGAACCCACTGCTGCAGCCATTGCTTATGGTCTTGACAAGAAGTCCTCTAGCACGGGAGAGAAGAATGTCTTGATCTTTGACCTTGGAGGCGGTACTTTTGATGTGTCATTGCTCACTATTGAAGAGGGTATCTTTGAGGTGAAGGCTACAGCAGGTGACACTCACCTTGGAGGAGAGGACTTTGACAACAGAATGGTCAACCACTTTGTTCAGGAGTTTAAAAGGAAAAACAAGAAGGATATTTCTGGAAATCCCAGAGCTCTTAGAAGGTTGAGGACTGCTTGCGAAAGGGCAAAGCGGACTCTTTCATCTACAGCTCAGACTACCATTGAGATTGATTCTTTATTTGAGGGAATTGACTTCTATTCAACCATCACTCGTGCAAGATTTGAGGAACTCAACATGGATCTCTTCAGGAAGTGTATGGAACCTGTGGAGAAGTGCTTGAGGGATGCGAAGATGGACAAAAGTAGTGTTGATGATGTTGTTCTTGTTGGTGGGTCCACAAGAATTCCGAAAGTACAACAACTCTTGCAAGACTTGTTCAATGGCAAAGAACTCTGTAAGAGTATCAACCCTGATGAGGCAGTAGCTTATGGTGCTGCTGTTCAGGCTGCCATCTTAAGCGGTGAAGGAAATGAGAAAGTTCAAGACCTCCTCCTCTTGGATGTCACTCCTCTATCTCTTGGTTTGGAAACTGCTGGAGGTGTAATGACTGTGTTGATTCCAAGAAACACCACCATTCCCACAAAGAAGGAGCAAGTCTTCTCCACCTACTCAGACAACCAGCCTGGTGTTTTGATCCAAGTATTTGAAGGTGAAAGAGCCAGGACTAGGGACAACAACTTGTTGGGTAAATTTGAACTCTCCGGAATACCCCCTGCTCCTAGAGGTGTGCCCCAGATCACCGTTTGCTTTGACATTGACGCAAATGGTATCTTGAATGTCTCTGCTGAGGACAAGACCACTGGACAAAAGAGCAAGATCACAATCACAAACGACAAGGGAAGATTGTCCAAGGAAGAGATTGAGAAGATGGTCCAAGAAGCTGAGAAGTACAAGGCTGAAGATGAAGAGCTGAAGAAGAAGGTTGATGCTAAGAACTCATTGGAGAATTATGCCTACAATATGAGGAACACTATCAAGGATGACAAGATCAGTTCTAAGCTAGACCCAGCTGATAAGAAGAAGATAGAGGACGCTGTTGAGGAGGCTGTTCAATGGTTAGAGAGCAACCAGCTTGCAGAGGTGGATGAGCTTGAAGACAAGATGAAGGAGCTCGAGGGTATCTGCAATCCGATCATTGCGAAGATGTACCAGGGTGCTGGTTCAGGTGGTGTTCCAGACATGGGTAGTGCTGGTATGGATTATGATGCTCCTCCAAGTGCTGGTGGTGCAGGTCCCAAGATTGAAGAAGTTGATTAA 1959 46.61 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDIKHWPFKVIPGPADKPMIVVNYRGEEKQFAAEEISSMVLIKMKEIAEAFLGSSVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKSSSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVDDVVLVGGSTRIPKVQQLLQDLFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKSKITITNDKGRLSKEEIEKMVQEAEKYKAEDEELKKKVDAKNSLENYAYNMRNTIKDDKISSKLDPADKKKIEDAVEEAVQWLESNQLAEVDELEDKMKELEGICNPIIAKMYQGAGSGGVPDMGSAGMDYDAPPSAGGAGPKIEEVD 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1161132 1164193 - Conep05aG0028200.1 Cone5ag0274 437292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0274 652 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Cone5ag0274 652 Gene3D Actin; Chain A, domain 4 235 318 - -
Cone5ag0274 652 Coils Coil 588 608 - -
Cone5ag0274 652 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cone5ag0274 652 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cone5ag0274 652 FunFam Heat shock 70 kDa 391 545 - -
Cone5ag0274 652 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cone5ag0274 652 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cone5ag0274 652 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cone5ag0274 652 FunFam Heat shock 70 kDa protein 71 126 - -
Cone5ag0274 652 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cone5ag0274 652 MobiDBLite consensus disorder prediction 620 652 - -
Cone5ag0274 652 FunFam Heat shock 70 kDa 235 318 - -
Cone5ag0274 652 FunFam Heat shock 70 kDa protein 198 260 - -
Cone5ag0274 652 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 58 66 - -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 36 48 - -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 337 353 - -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 396 415 - -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 8 21 - -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 209 219 - -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 146 166 - -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 369 389 - -
Cone5ag0274 652 PRINTS 70kDa heat shock protein signature 477 493 - -
Cone5ag0274 652 FunFam Heat shock protein 70 10 197 - -
Cone5ag0274 652 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cone5ag0274 652 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Cone5ag0274 652 Gene3D - 192 366 - -
Cone5ag0274 652 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Cone5ag0274 652 Gene3D - 71 126 - -
Cone5ag0274 652 FunFam Heat shock 70 kDa protein 539 652 - -
Cone5ag0274 652 SUPERFAMILY Actin-like ATPase domain 196 388 IPR043129 -
Cone5ag0274 652 Gene3D - 10 384 - -
Cone5ag0274 652 Coils Coil 518 548 - -
Cone5ag0274 652 Gene3D - 546 619 IPR029048 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0277 Cone-Chr17:1325603 Cone5ag0274 Cone-Chr5:1161132 0 dispersed
Cone20ag1131 Cone-Chr20:7724018 Cone5ag0274 Cone-Chr5:1161132 0 dispersed
Cone4ag0584 Cone-Chr4:2688813 Cone5ag0274 Cone-Chr5:1161132 2.68E-43 dispersed
Cone5ag0274 Cone-Chr5:1161132 Cone7ag0556 Cone-Chr7:2675379 0 dispersed
Cone1ag1290 Cone-Chr1:56259953 Cone5ag0274 Cone-Chr5:1161132 1.88E-138 transposed
Cone1ag1291 Cone-Chr1:56260919 Cone5ag0274 Cone-Chr5:1161132 1.77E-40 transposed
Cone1ag1289 Cone-Chr1:56259549 Cone5ag0274 Cone-Chr5:1161132 1.35E-50 wgd
Cone1ag0654 Cone-Chr1:6219559 Cone5ag0274 Cone-Chr5:1161132 0 wgd
Cone10ag0303 Cone-Chr10:1439048 Cone5ag0274 Cone-Chr5:1161132 0 wgd
Cone19ag1316 Cone-Chr19:8848178 Cone5ag0274 Cone-Chr5:1161132 7.55E-111 wgd
Cone3ag0331 Cone-Chr3:1685177 Cone5ag0274 Cone-Chr5:1161132 0 wgd
Cone5ag0274 Cone-Chr5:1161132 Cone5ag1163 Cone-Chr5:5226230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0274 K03283 - gmx:100798307 1174.84