Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0283 ATGTCTTTTCAGCCAAAGAGCTTTTGGATGCCCAGGGACGCTGGGTGTTTAACTGATGGGGAGATGAGTTATGACAGTTCATCCAGAATTGAGCCAAAGCGTGCCCAGCAGTGGTTCATGGATGGCAGTGCACCAGAGTTATTCAGCAGCAAAAAGCAAGCCAAAGAAGGTGTTAACATGAGAACTGTTCCAGGTCTGCATATGAATCTTTCGTGGGAAAACACACCAAGCTTCCATTCTGCTCCTGGGCCTTTTACTGATCGTCTCCTCGGACCTGAGCCTTTACTACCGGTGGTTGATAGAAGCATCTCTCCTGTCGGAAATACACATGTGAATGTGGAAAGGAAGGATTCTGAGAATCAGTATGGAAATGATACTTCGATGGGGTTATCTATGTCCCATTCTATTGAAGATCCCTCTTCATGTATAGATTACGGTGGAATTAGGAAAGTTAAGGTCAATCAAGTTAGGGAGTCGGAGAATGGCATGTCTGCTGCTTCCATGGGGTGCTTATATGGCAGTAGAGATACTAGTACAATATCAATGGGTACAAGGTACAGTAAAAATGATGAGAATATCATATCGTTGGGCCCAACTTACAGCAGAAGGGTTGAGAGTAACATCTCAATGGGAACTGCATTCAGTAAGACAGGTGACAATTTTATATCAATGGGTCAAATCTTCAACAAAGGTGATGGCAATTTCATTTCTATGGGTCATACCTACAACAAGGGAGGTAATGGTACCTTATCAATGGGTCAGCCCTTTGATAAAGAGGATGGGACTTTTATATCGATAGGTCAGTCTTATGAAAAGGAAGACTGCAATGTGATTTCATTAGGTACATCATACAACAAGGGCCATGAGAACTTTGTTTCCATGGGGCCATCCTACAGTAAAGCAAATGAGAATTCTACCTCCATGGTTCCAGCATATAATAAAGGGAACAATGATACTTTGTCAATGGATCCAACATACAACAAAGGGGATTCAAGTGCTCTATCTATGGGCCACATTTATAATAAGGGTGAGAGCAACGCAATATCTTTTTGTGGTTTTGATGAGGAACCGGAGACAAATCCTTCTGGTGGAATCATTAGTGGCTATGATCTCGTAATGGGTAATCAAAACTCACAAGCTTCTGAGGTATCGACCCAGAAGGATGCAGTTTATTCAAATTCTGATGTAAATGTCAACACCACTCCAAAAGCTAACTCTAAGATTGAAACCCCTTCCAAGAATAAAGAGCAAAAGATAACTAAGAAGGTTCCTCCAAATAGTTTCCCTTCAAATGTCAAGAGCTTGTTATCCACTGGTATGCTTGATGGGGTTCCTGTGAAGTACATTTCCTGGGCACGGGATAAAAAAGTTACAGGAGTTGTAAAAGGGACTGGATATTTGTGCAGCTGTGAAGACTGCAAGGAGTCTAAGGTCCTTAATGCTTATGAGTTTGAGCGTCATGCTGGTTGTAAGACGAAGCACCCAAACAATCACATCTATTTTGAGAATGGGAAGAGTATCTATGCAGTTGTTCAAGAACTGAAGAACACTCGGCAAGAGATCCTCTTCGACATGATTCAGAATGTCACAGGCTCTCCTATCAATCAAAAGAATTTCCGAGCATGGAAAGCATCATATCAAGCTGCCACCCGTGAACTTCAACGCATTTATGGAAAGGATGAGGTGATCATGCCAACTTGA 1701 42.09 MSFQPKSFWMPRDAGCLTDGEMSYDSSSRIEPKRAQQWFMDGSAPELFSSKKQAKEGVNMRTVPGLHMNLSWENTPSFHSAPGPFTDRLLGPEPLLPVVDRSISPVGNTHVNVERKDSENQYGNDTSMGLSMSHSIEDPSSCIDYGGIRKVKVNQVRESENGMSAASMGCLYGSRDTSTISMGTRYSKNDENIISLGPTYSRRVESNISMGTAFSKTGDNFISMGQIFNKGDGNFISMGHTYNKGGNGTLSMGQPFDKEDGTFISIGQSYEKEDCNVISLGTSYNKGHENFVSMGPSYSKANENSTSMVPAYNKGNNDTLSMDPTYNKGDSSALSMGHIYNKGESNAISFCGFDEEPETNPSGGIISGYDLVMGNQNSQASEVSTQKDAVYSNSDVNVNTTPKANSKIETPSKNKEQKITKKVPPNSFPSNVKSLLSTGMLDGVPVKYISWARDKKVTGVVKGTGYLCSCEDCKESKVLNAYEFERHAGCKTKHPNNHIYFENGKSIYAVVQELKNTRQEILFDMIQNVTGSPINQKNFRAWKASYQAATRELQRIYGKDEVIMPT 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1205653 1209401 - Conep05aG0029200.1 Cone5ag0283 437301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0283 566 MobiDBLite consensus disorder prediction 395 424 - -
Cone5ag0283 566 PANTHER AUTOIMMUNE REGULATOR 6 548 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone5ag0283 566 Pfam Tify domain binding domain 459 514 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0283 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1260 Cone-Chr11:9358001 Cone5ag0283 Cone-Chr5:1205653 2.59E-77 dispersed
Cone1ag1303 Cone-Chr1:56307972 Cone5ag0283 Cone-Chr5:1205653 3.03E-214 wgd
Cone13ag1327 Cone-Chr13:9804883 Cone5ag0283 Cone-Chr5:1205653 1.60E-39 wgd
Cone18ag0330 Cone-Chr18:1649622 Cone5ag0283 Cone-Chr5:1205653 2.61E-76 wgd
Cone19ag1312 Cone-Chr19:8830190 Cone5ag0283 Cone-Chr5:1205653 5.02E-40 wgd
Cone3ag0322 Cone-Chr3:1652424 Cone5ag0283 Cone-Chr5:1205653 1.76E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g255 . . . Bda15g00213 . . Bma03g00301 . Cmo04g00229 Cmo04g01272 Cma04g01200 Cma04g00226 Car04g01102 . . . Cpe01g00193 . . . . . . . Cla07g00294 Cam07g0311 Cec07g0355 Cco07g0316 Clacu07g0303 Cmu07g0360 Cre07g0670 Cone1ag1303 Cone5ag0283 . . Lsi03g00413 . Chy10g00556 Cme10g00876 Blo13g00755 Blo04g00288 . . Bpe04g01846 . . Bma08g00988 . . . . . . . Cpe01g01104 . . . . . . . . . . . . . . . Lsi04g00872 Csa05g00695 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag1235 . 158 939 PHD Transcription Factor Family AT2G36720 50.8 5.0e-224 775.4
Cone19ag1312 . 5 872 PHD Transcription Factor Family AT3G53680 56.5 2.2e-265 912.5
Cone13ag1327 . 1 864 PHD Transcription Factor Family AT3G53680 55.0 3.3e-261 898.7
Cone3ag0322 . 378 507 PHD Transcription Factor Family AT3G53680 56.2 2.6e-40 164.9
Cone5ag0283 . 418 547 PHD Transcription Factor Family AT3G53680 52.3 2.3e-36 151.8
Cone19ag0716 . 11 651 PHD Transcription Factor Family AT5G22260 51.6 1.1e-185 647.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44