Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0297 ATGGATGATGAAAAATTCATTATAAGGGGATGGATGGATCTTCATGCCAGTGACAAAAAAAAAGTTCTTCACCTAGAGCTTGAAGTGGGCATGGTGGGTACTGAGGATAGTAACTCTGGAAATTCACTGGCTCCACCCCCTCTCTCTGGAAATAGGAAATTGTTCTGGCGCTCAGCATCCTGGTCTTCATCTCGAACCTCTCCTCATAATCCAGAGTCTGAGGAAAAAGATGGTTTAGATCTGAATAGTAACATTCCTAACAGTAATGGGCAAAACAGAAGGTTTCCAGCTCCATTAACCCCTAGATCCCAACAAAATTGCAAGGCAAGGTCATGTTTACCTCCATTGCAGCCATTGTCGATAGCTCGCCGGAGCTTGGATGAATGGCCAAAGGCAGGGTCGGATGATATAGGGGAGTGGCCTCAACCTCCTACCCCAAGTGGAAGAGGAAATGGGGAGAGGTTGAAGCTTGATCTGTCTACAATTCAGAGAGACCCGGATAAGAGTGGGGGACTAGTGAAGAGAGATAAAATTGCTTTTTTCGACAAGGAGTGTTCTAAAGTGGCTGAACATGTCTACCTTGGTGGGGATGCAGTTGCTCGAGATAGAGATATACTTAAACAGAATGGAATCACCCATATATTGAATTGTGTGGGGTTTGTTTGCCCAGAATACTTCAAAACTGATTTTGTGTATAGAACTTTATGGTTGCAAGATAGCCCATCAGAAGACATTACTAGCATCTTATATGATGTTTTTGACTACTTTGAAGATGTTAGGGAAGAGGAAGGAAGGGTTTTTGTTCATTGTTGCCAAGGAGTATCTAGGTCCACATCCTTAGTTATTGCTTATCTAATGTGGAGAGAAGGACAGAGCTTTGATGATGCATTTCAGTATGTGAAAGCAGCTAGAGGTATAGCTGATCCAAATATGGGTTTTGCTTGCCAATTATTACAGTGTCAAAAGAGAGTCCATGCATTTCCTCTAAGCCCAAGTTCACTTTTGAGGATGTATAGAATCGCCCCACACTCATCATATGATCCGTTGCATCTTGTCCCTAAAATGTTAAATGATCCTTCTCCTTCTGCTCTAGATTCCAGAGGTGCATTTATCATTCATATACCTTCTATGATGTATGTTTGGATTGGGAAGAATTGTGAGGCAATAATGGAAAGGGATGCAAGGGGAGCAGTTTGTCAGATTGTAAGATATGAGAGAGTGCAGGGGCCGATAATAATGATTAAGGAAGGACAAGAACCGGTTAATTTTTGGGATTCTTTTTCGAACTTGTTACCTTTGATGGACAAATCACGCAATGGAAACAACCCTGGGGAATCAAAGGGTAAGATTTGTGCGGGTGAGAGAAAAGTGGACTTATATGATGTTGATTTTGAGATTTTTCAGAAGGCTATTACTGGTGGTTTTGTTCCTCCATTTGCTTCATCAGAGAATGAACATGAAACCCGTCTTCCTGCTAGAGAAAGCAGTTGGAGTGTGCTAAGGAGAAAGTTTGCTTCTGGCATTATGAAGGAGTTTGTATCAGCTCCTAGAATCTTACTTTCTAGAGCCTATTCAGATTCTATGATGGTGGTACATCCAAGTGCTAAATCTACTTCTCCTTCTTCATCATCATCTTCTTCCTCATCTTCTTCACCTAGTTTACACTCTCCAGATTCCCTCTCTTCTGACTCTAGTACAAACTCAAAGTTCTTTTCAGAATCTCCTTTGAATTCGCCATCCGCTGCTTCACGTTCATTTCCAGTAACTTTGTCAAACTTTTCTAACCCGTCTCACCTTTCATCTGCAACTCCCTTTCAGCCCGCACAAGATGGTCCAAAACTCTCTGTTGAGGTAGCTTCAGAACCTAGTTCTCAATCATTCCCATTACCATCTAAAAAGCTTTCACCTTCCCTTGTAGAACGCAGAGGTAGCTTATCAAGGAATCTGAAATTGCCATTAATGACTGGTAAAAAGCAGGTAGCAAGTAATCCTTCAAGTTTCCTTCCCAAGAGAGAAGATGGTGAAATGATGGACACTGCTAGTTACTCTTTAAATGAGACATATAGTAAGGAAAATTTCTTAGAGACTGTTAACAGTGTTGAAAGGGAAGGGGAAGATTCAACCCATAAGTGTAAGGAAATTGTTGAAAATGGAGTCCAAGGCAGGGAAAGGAGCCCGAACTTATTCATGGGAAGAGGCCAAGTATCCAATATCTTAAATAGAGTGGAAGGAACTAGCTCAGCGCAATGTGTTCGACCTTTGGCTTATAGTTGGCCCCGCTTAGAAAATATTGCAGCATTCAATGCAACTTACCTGGATTCTAAAGCTGCTTGGGCAATTTTCTCACCAAATAGAGGCGTAGGCAAGAAAGATGAAAGTATATTGTATCTTTGGGTAGGTAGTTCTTTTGACCATGAACAGTGTCAGATTCATTTAGATAGTGACGAAGGGGTAGAAAATTTAGAAAAGATTGACTGGAATCAAGTGGGTCGTCATGTTCTCACTAAGGTGGGAATGCCAGATGAGACTGAAATCAAGATTATTAAGGAAGATGAAGAAACGGAGGAATTTCTTGCATTATTGACTCTGATGTAG 2595 41.31 MDDEKFIIRGWMDLHASDKKKVLHLELEVGMVGTEDSNSGNSLAPPPLSGNRKLFWRSASWSSSRTSPHNPESEEKDGLDLNSNIPNSNGQNRRFPAPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRDPDKSGGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHILNCVGFVCPEYFKTDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREEEGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSSYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSMMYVWIGKNCEAIMERDARGAVCQIVRYERVQGPIIMIKEGQEPVNFWDSFSNLLPLMDKSRNGNNPGESKGKICAGERKVDLYDVDFEIFQKAITGGFVPPFASSENEHETRLPARESSWSVLRRKFASGIMKEFVSAPRILLSRAYSDSMMVVHPSAKSTSPSSSSSSSSSSSPSLHSPDSLSSDSSTNSKFFSESPLNSPSAASRSFPVTLSNFSNPSHLSSATPFQPAQDGPKLSVEVASEPSSQSFPLPSKKLSPSLVERRGSLSRNLKLPLMTGKKQVASNPSSFLPKREDGEMMDTASYSLNETYSKENFLETVNSVEREGEDSTHKCKEIVENGVQGRERSPNLFMGRGQVSNILNRVEGTSSAQCVRPLAYSWPRLENIAAFNATYLDSKAAWAIFSPNRGVGKKDESILYLWVGSSFDHEQCQIHLDSDEGVENLEKIDWNQVGRHVLTKVGMPDETEIKIIKEDEETEEFLALLTLM 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1254999 1258888 - Conep05aG0030600.1 Cone5ag0297 437315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0297 864 CDD DSP 185 319 - -
Cone5ag0297 864 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 253 304 IPR000387 GO:0016311(InterPro)
Cone5ag0297 864 Pfam Dual specificity phosphatase, catalytic domain 192 322 IPR000340 GO:0016311(InterPro)
Cone5ag0297 864 PANTHER MKPA PROTEIN 38 861 - -
Cone5ag0297 864 MobiDBLite consensus disorder prediction 618 632 - -
Cone5ag0297 864 Gene3D Protein tyrosine phosphatase superfamily 173 326 IPR029021 -
Cone5ag0297 864 MobiDBLite consensus disorder prediction 597 639 - -
Cone5ag0297 864 MobiDBLite consensus disorder prediction 130 152 - -
Cone5ag0297 864 MobiDBLite consensus disorder prediction 61 112 - -
Cone5ag0297 864 SMART dsp_5 184 323 IPR020422 GO:0006470(InterPro)
Cone5ag0297 864 Gene3D Severin 335 430 IPR029006 -
Cone5ag0297 864 MobiDBLite consensus disorder prediction 533 584 - -
Cone5ag0297 864 ProSitePatterns Tyrosine specific protein phosphatases active site. 268 278 IPR016130 GO:0016311(InterPro)
Cone5ag0297 864 MobiDBLite consensus disorder prediction 80 111 - -
Cone5ag0297 864 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 179 325 IPR029021 -
Cone5ag0297 864 ProSiteProfiles Dual specificity protein phosphatase domain profile. 184 326 IPR020422 GO:0006470(InterPro)
Cone5ag0297 864 SUPERFAMILY Actin depolymerizing proteins 331 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0682 Cone-Chr12:6241913 Cone5ag0297 Cone-Chr5:1254999 4.19E-153 dispersed
Cone13ag1091 Cone-Chr13:8834505 Cone5ag0297 Cone-Chr5:1254999 2.58E-182 dispersed
Cone19ag1080 Cone-Chr19:7866960 Cone5ag0297 Cone-Chr5:1254999 1.72E-177 dispersed
Cone5ag0297 Cone-Chr5:1254999 Cone8ag0701 Cone-Chr8:7076874 3.28E-149 dispersed
Cone1ag1316 Cone-Chr1:56368187 Cone5ag0297 Cone-Chr5:1254999 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0297 - - - 0.0