Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0316 ATGGTATCAGATACTTTTATGAAGATTGTGTCTCCTTGCTGGAAACCTTCCGCAGTAGAGGGGGAAAGCTCTGGTCGAACCTCAGATTCTAGTGGTAGGGTTGATGGGTTATTGTGGTACAAAGATTCTGGTCGCCACGTCAATGGAGAGTTCTCCATGGCAGTTGTTCAAGCAAACGATTCGTTAGAAGATCATAGTCAACTTGAATCGGGCCCCATGAGCTTGTCTGAGTCTGGTCCTCAAGGGACATTTGTTGGAATTTATGACGGGCATGGTGGTCCAGAAGCTGCTCAATTTATATATGATCGCTTGTTTAATAATCTCAAAAAGTTCACCTCAGAGAGTCGAGGATTATCAGCCGACGTAATCAACAAAGCGTTTTTGGAAACAGAGGAAGAATTCTTATCTTTAGTAAAGAAGCAGTGGCTAAATAAGCCCCAAATTGCTTCCGTGGGTTCTTGTTGTTTGGTAGGCATCATTTGTTGCGGGCTGCTATATATTGCAAATGCGGGAGATTCTAGAGTGGTCTTAGGAAGACTTGAAAAAACAGTCAAAGAAGTCAAAGCTGTTCAGTTATCGTCCGAGCACAATGCAAGTAGGGAATCTGTGAGGGAGGAATTACGCTCTTTGCACCCCGATGATCCACAGATTGTAGTCTTGAAGCACACAGTTTGGCGTGTCAAGGGTATTATACAGATTTCTAGATCAATTGGAGATGCCTATCTGAAGAATTCAGAATTCAATAGAGAGCCACTCCTCCCTAAATTTAGGCTGGAAGAACCATTCCAGAAGCCGATTCTAAAAGCCGAGCCTGCAATCTTAGTACAGAAACTCTACCCAGAAGATCAGTTTCTTATTTTTGCATCAGATGGCTTGTGGGAATATTTGACCAATCAGGAAGCAGTTAACATTGTTCACAGCCGCCCCCGTAATGGTATTGCAAGGAAACTAGTTAAAACCGCACTTAGGGAAGCTGCTAAGAAAAGAGAAATGAGATACTCGGACTTGAAAAGGATCGATCATGGGGTGAGGAGACATTTTCATGATGATATAACGGTTATTGTTTTGTTCCTTGATTCTCCTCTGATCAGTGGCAGCTCATCAACCGGACCTCTGCTTTCGATCAGAGGTGGGGTCGGTATTATCTCTGCCAAGTCATAA 1161 43.32 MVSDTFMKIVSPCWKPSAVEGESSGRTSDSSGRVDGLLWYKDSGRHVNGEFSMAVVQANDSLEDHSQLESGPMSLSESGPQGTFVGIYDGHGGPEAAQFIYDRLFNNLKKFTSESRGLSADVINKAFLETEEEFLSLVKKQWLNKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRLEKTVKEVKAVQLSSEHNASRESVREELRSLHPDDPQIVVLKHTVWRVKGIIQISRSIGDAYLKNSEFNREPLLPKFRLEEPFQKPILKAEPAILVQKLYPEDQFLIFASDGLWEYLTNQEAVNIVHSRPRNGIARKLVKTALREAAKKREMRYSDLKRIDHGVRRHFHDDITVIVLFLDSPLISGSSSTGPLLSIRGGVGIISAKS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1328554 1331254 + Conep05aG0032700.1 Cone5ag0316 437334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0316 386 FunFam Phosphatase 2C family protein 39 368 - -
Cone5ag0316 386 SUPERFAMILY PP2C-like 63 359 IPR036457 -
Cone5ag0316 386 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169(InterPro)
Cone5ag0316 386 SMART PP2C_4 44 356 IPR001932 -
Cone5ag0316 386 Gene3D - 35 364 IPR036457 -
Cone5ag0316 386 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Cone5ag0316 386 Pfam Protein phosphatase 2C 73 328 IPR001932 -
Cone5ag0316 386 PANTHER PROTEIN PHOSPHATASE 43 357 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone5ag0316 386 CDD PP2Cc 51 358 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0316 Cone-Chr5:1328554 Cone8ag0870 Cone-Chr8:8576582 6.16E-184 dispersed
Cone13ag1304 Cone-Chr13:9722631 Cone5ag0316 Cone-Chr5:1328554 6.26E-139 wgd
Cone19ag1291 Cone-Chr19:8745634 Cone5ag0316 Cone-Chr5:1328554 1.70E-153 wgd
Cone3ag0302 Cone-Chr3:1556709 Cone5ag0316 Cone-Chr5:1328554 7.35E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0316 K01102 - csv:101220760 630.943