Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0318 ATGGCTTGGTTTCTCTGTACTGGAAATCCTAATAAGAAAGCGAAGAAGCTAAGTAAGAAACCGGAGGATCAGATCCCGTCATCAACTCCAGAAAAGCTCAGAGTAAATCTGGTTATGAATATGAAGGTGTCCAACGGTGAAAAATCCGAACACATTGCAGCACATACGTTTACATTCCGAGAATTAGCAAATGCTACGAAAAATTTCCGAGCAGATTATCTTCTTGGCGAAGGAGGTTTTGGCCGAGTATATAAAGGACGATTAGATAGCACAAATCAGGTCGTAGCAATAAAGCAACTCGATCGAAACGGGCTTCAAGGAAACAGAGAATTCCTTGTAGAAGTACTAATGTTAAGCCTTCTTCACCATCCTAATCTCGTCAACCTAATCGGCTACTGTGCTGATGGAGATCAAAGACTCTTGGTTTATGAATACATGCCACTTGGCTCTTTAGAAGACCATCTACAAGATCTTCCACATGATAAAACACGGCTCGATTGGAATACACGGATGAAAATAGCGGCGGGTGCTGCAAAGGGCTTGGAATATTTACACGACAAAGCTAGCCCGCCTGTCATTTATCGCGATTTGAAGTGCTCAAACATTTTGCTAGGTCAAGACTATCAGCCCAAGCTATCCGATTTTGGCTTGGCTAAATTGGGGCCCGTAGGGGATAAAACTCACGTGTCGACAAGAGTTATGGGAACTTATGGATATTGTGCGCCTGAATATGCCATGACCGGTCAACTCACTTTGAAATCGGACGTTTACAGTTTTGGAGTCGTGCTCCTAGAAATTATTACAGGTAGAAAAGCAATTGACAATTCACGGGCGGCAGGGGAACATAATTTGGTAGCATGGGCAAGGCCATTGTTCAAGGATAGAAGGAAATTTGCACAAATTGCAGATCCGTTGCTGCAAGGACAGTATCCGGTTAGAGGGTTGTACCAAGCTTTAGCAGTTGCTGCTATGTGTGTTCAAGAACAACCTAGTATAAGACCACTTATAGCTGATGTCGTAACTGCCCTGACTTATCTTGCTTCCCAGAAATACGATCTGGAAACACAGCCAATCCAAAGCTCCCGATCAAGCTCATCGTCTACTCCTCGGTTGAGAAGGGAACAGTGA 1128 43.79 MAWFLCTGNPNKKAKKLSKKPEDQIPSSTPEKLRVNLVMNMKVSNGEKSEHIAAHTFTFRELANATKNFRADYLLGEGGFGRVYKGRLDSTNQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLQDLPHDKTRLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLKCSNILLGQDYQPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWARPLFKDRRKFAQIADPLLQGQYPVRGLYQALAVAAMCVQEQPSIRPLIADVVTALTYLASQKYDLETQPIQSSRSSSSSTPRLRREQ 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1348653 1350746 + Conep05aG0032900.1 Cone5ag0318 437336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0318 375 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Cone5ag0318 375 CDD STKc_IRAK 75 344 - -
Cone5ag0318 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0318 375 Pfam Protein tyrosine and serine/threonine kinase 74 275 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0318 375 FunFam Serine/threonine-protein kinase PBS1 41 145 - -
Cone5ag0318 375 ProSiteProfiles Protein kinase domain profile. 69 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0318 375 Gene3D Phosphorylase Kinase; domain 1 39 145 - -
Cone5ag0318 375 SUPERFAMILY Protein kinase-like (PK-like) 52 351 IPR011009 -
Cone5ag0318 375 PANTHER OS07G0668900 PROTEIN 29 365 - -
Cone5ag0318 375 MobiDBLite consensus disorder prediction 8 29 - -
Cone5ag0318 375 SMART serkin_6 69 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0318 375 FunFam Serine/threonine-protein kinase PBS1 146 361 - -
Cone5ag0318 375 Gene3D Transferase(Phosphotransferase) domain 1 146 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0021 Cone-Chr20:137719 Cone5ag0318 Cone-Chr5:1348653 1.16E-163 dispersed
Cone4ag0167 Cone-Chr4:783755 Cone5ag0318 Cone-Chr5:1348653 4.27E-146 dispersed
Cone4ag2022 Cone-Chr4:14062413 Cone5ag0318 Cone-Chr5:1348653 1.32E-38 dispersed
Cone5ag0318 Cone-Chr5:1348653 Cone7ag0170 Cone-Chr7:711534 8.30E-187 dispersed
Cone1ag1332 Cone-Chr1:56450553 Cone5ag0318 Cone-Chr5:1348653 6.43E-259 wgd
Cone1ag0688 Cone-Chr1:6432681 Cone5ag0318 Cone-Chr5:1348653 6.85E-35 wgd
Cone10ag0271 Cone-Chr10:1290438 Cone5ag0318 Cone-Chr5:1348653 7.14E-196 wgd
Cone11ag1273 Cone-Chr11:9465606 Cone5ag0318 Cone-Chr5:1348653 1.20E-173 wgd
Cone18ag0311 Cone-Chr18:1529245 Cone5ag0318 Cone-Chr5:1348653 1.55E-176 wgd
Cone3ag0298 Cone-Chr3:1540435 Cone5ag0318 Cone-Chr5:1348653 8.28E-195 wgd
Cone5ag0318 Cone-Chr5:1348653 Cone5ag1197 Cone-Chr5:5414199 1.21E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82822 PF13507 GATase_5 3.80E-103 CL0014 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0318 - - - 0.0