Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag0321 | ATGGAAGAAGAAGTGGAAGATCAAAACCAGACAGCAATGGAGGAAGATCACGATTCCAGAACGACCACTTCAAATTCTTCTATAATCAATGCTGAAGAAATTCCCTCCTGCCGAGAAGAAGAAGAATCTGTTTTCATATTCGACATCTTGAAGAAAGAGAACCCATCATCGCCTCTTTTTCCGTCTGCCGTTAAGAATGGCGTCGGGGGAGGCAGTTTCTTCTCCGACTCGTCGGAGTTTGTCAAGTTGAGGCTCTCTAACGACCCGCTCTCAAGATCGGTGTCGTCGACACAGTGGTTGAACTTATCGTTTGATGAGTCAGCAGGTCAAAGTCAAAGAGAGATGGTCAAAACCATGAAGCAGCAAAATGAACAGAAGAAGGTTAGAAAGAGCAGGAGAGGACCCAGGTCTCGGAGCTCTCAATACCGTGGAGTCACTTTTTACAGAAGAACTGGCCGATGGGAATCACATATTTGGGATTGTGGAAAGCAGGTGTACTTGGGTGGATTCGACACTGCTCATTCCGCAGCAAGAGCATATGATCAAGCTGCAATCAAGTTCCGTGGAGTTGAGGCTGATATCAACTTTAACCTAAGCGACTATGAAGAAGATCTGAAACAGATGAAGAACTTGGGTAAAGAAGAATTCGTGCAGTTGTTACGTAGAAGAAGCACTGGATTGTCCAGAACGAGCTCTAAATTTAGAGGGGCCACACTCCATAAACGATGGGAAGCTCGAATGGGAAACACTAACAATGGAGGCAGCAGTGATCACCATCTTGATCTAAGGCTTGGGATTTCTCTAGCATCTGATCACAACGAGAATGGTCCAAAAGGGATTAGTGATAAAGTAGAAGACAATAGAATGGGTTTTTTCAACTACCCTAGTAGTACTGTTTGCGACGAATCCGACAAGAAGAGGAGACAAAAGATAATAATGGAGAGTACTAAACAGGCTCATATTCTTACTATGGTTTCGTCCAAGCAGCACCACCCTTCTATATGGCCTGCAACTCATTCTGGGTTTTTACCAAACAATGGGGAACAAGGTATTTTCAAGAATCATATGTCTTCCTCCTCCATTGCAGCATCATCGGGATTCTCTTCCTCTACAAGTACTATTGGATTATCGGGCACTTCTGCTAATGCTCTTCCTCTACTTTACCCTAATACTACTACTACTACTACTACTAATAATAATAATTCTGTTCTTAATTTCTTTTATTCTGTACCCACCGAATTTTAA | 1245 | 42.89 | MEEEVEDQNQTAMEEDHDSRTTTSNSSIINAEEIPSCREEEESVFIFDILKKENPSSPLFPSAVKNGVGGGSFFSDSSEFVKLRLSNDPLSRSVSSTQWLNLSFDESAGQSQREMVKTMKQQNEQKKVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDQAAIKFRGVEADINFNLSDYEEDLKQMKNLGKEEFVQLLRRRSTGLSRTSSKFRGATLHKRWEARMGNTNNGGSSDHHLDLRLGISLASDHNENGPKGISDKVEDNRMGFFNYPSSTVCDESDKKRRQKIIMESTKQAHILTMVSSKQHHPSIWPATHSGFLPNNGEQGIFKNHMSSSSIAASSGFSSSTSTIGLSGTSANALPLLYPNTTTTTTTNNNNSVLNFFYSVPTEF | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1359024 | 1360875 | + | Conep05aG0033200.1 | Cone5ag0321 | 437339 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag0321 | 414 | SMART | rav1_2 | 141 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0321 | 414 | SUPERFAMILY | DNA-binding domain | 140 | 198 | IPR016177 | GO:0003677(InterPro) | |
Cone5ag0321 | 414 | Gene3D | AP2/ERF domain | 140 | 199 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0321 | 414 | Pfam | AP2 domain | 141 | 189 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0321 | 414 | MobiDBLite | consensus disorder prediction | 119 | 142 | - | - | |
Cone5ag0321 | 414 | CDD | AP2 | 141 | 199 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0321 | 414 | FunFam | AP2-like ethylene-responsive transcription factor | 140 | 199 | - | - | |
Cone5ag0321 | 414 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 22 | 260 | - | - | |
Cone5ag0321 | 414 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cone5ag0321 | 414 | ProSiteProfiles | AP2/ERF domain profile. | 141 | 197 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag0321 | Cone-Chr5:1359024 | Cone8ag0138 | Cone-Chr8:727322 | 1.19E-61 | dispersed | |
Cone1ag1335 | Cone-Chr1:56459580 | Cone5ag0321 | Cone-Chr5:1359024 | 5.08E-180 | wgd | |
Cone1ag0696 | Cone-Chr1:6470469 | Cone5ag0321 | Cone-Chr5:1359024 | 7.79E-72 | wgd | |
Cone10ag0265 | Cone-Chr10:1265019 | Cone5ag0321 | Cone-Chr5:1359024 | 2.86E-62 | wgd | |
Cone3ag0291 | Cone-Chr3:1509147 | Cone5ag0321 | Cone-Chr5:1359024 | 2.83E-63 | wgd | |
Cone5ag0321 | Cone-Chr5:1359024 | Cone5ag1204 | Cone-Chr5:5461638 | 1.39E-69 | wgd | |
Cone5ag0321 | Cone-Chr5:1359024 | Cone9ag1333 | Cone-Chr9:10006464 | 4.32E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46111 | PF01553 | Acyltransferase | 4.10E-05 | CL0228 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag0321 | K09284 | - | csv:101204131 | 248.825 |