Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0321 ATGGAAGAAGAAGTGGAAGATCAAAACCAGACAGCAATGGAGGAAGATCACGATTCCAGAACGACCACTTCAAATTCTTCTATAATCAATGCTGAAGAAATTCCCTCCTGCCGAGAAGAAGAAGAATCTGTTTTCATATTCGACATCTTGAAGAAAGAGAACCCATCATCGCCTCTTTTTCCGTCTGCCGTTAAGAATGGCGTCGGGGGAGGCAGTTTCTTCTCCGACTCGTCGGAGTTTGTCAAGTTGAGGCTCTCTAACGACCCGCTCTCAAGATCGGTGTCGTCGACACAGTGGTTGAACTTATCGTTTGATGAGTCAGCAGGTCAAAGTCAAAGAGAGATGGTCAAAACCATGAAGCAGCAAAATGAACAGAAGAAGGTTAGAAAGAGCAGGAGAGGACCCAGGTCTCGGAGCTCTCAATACCGTGGAGTCACTTTTTACAGAAGAACTGGCCGATGGGAATCACATATTTGGGATTGTGGAAAGCAGGTGTACTTGGGTGGATTCGACACTGCTCATTCCGCAGCAAGAGCATATGATCAAGCTGCAATCAAGTTCCGTGGAGTTGAGGCTGATATCAACTTTAACCTAAGCGACTATGAAGAAGATCTGAAACAGATGAAGAACTTGGGTAAAGAAGAATTCGTGCAGTTGTTACGTAGAAGAAGCACTGGATTGTCCAGAACGAGCTCTAAATTTAGAGGGGCCACACTCCATAAACGATGGGAAGCTCGAATGGGAAACACTAACAATGGAGGCAGCAGTGATCACCATCTTGATCTAAGGCTTGGGATTTCTCTAGCATCTGATCACAACGAGAATGGTCCAAAAGGGATTAGTGATAAAGTAGAAGACAATAGAATGGGTTTTTTCAACTACCCTAGTAGTACTGTTTGCGACGAATCCGACAAGAAGAGGAGACAAAAGATAATAATGGAGAGTACTAAACAGGCTCATATTCTTACTATGGTTTCGTCCAAGCAGCACCACCCTTCTATATGGCCTGCAACTCATTCTGGGTTTTTACCAAACAATGGGGAACAAGGTATTTTCAAGAATCATATGTCTTCCTCCTCCATTGCAGCATCATCGGGATTCTCTTCCTCTACAAGTACTATTGGATTATCGGGCACTTCTGCTAATGCTCTTCCTCTACTTTACCCTAATACTACTACTACTACTACTACTAATAATAATAATTCTGTTCTTAATTTCTTTTATTCTGTACCCACCGAATTTTAA 1245 42.89 MEEEVEDQNQTAMEEDHDSRTTTSNSSIINAEEIPSCREEEESVFIFDILKKENPSSPLFPSAVKNGVGGGSFFSDSSEFVKLRLSNDPLSRSVSSTQWLNLSFDESAGQSQREMVKTMKQQNEQKKVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDQAAIKFRGVEADINFNLSDYEEDLKQMKNLGKEEFVQLLRRRSTGLSRTSSKFRGATLHKRWEARMGNTNNGGSSDHHLDLRLGISLASDHNENGPKGISDKVEDNRMGFFNYPSSTVCDESDKKRRQKIIMESTKQAHILTMVSSKQHHPSIWPATHSGFLPNNGEQGIFKNHMSSSSIAASSGFSSSTSTIGLSGTSANALPLLYPNTTTTTTTNNNNSVLNFFYSVPTEF 414
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 1359024 1360875 + Conep05aG0033200.1 Cone5ag0321 437339
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0321 414 SMART rav1_2 141 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0321 414 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677(InterPro)
Cone5ag0321 414 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0321 414 Pfam AP2 domain 141 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0321 414 MobiDBLite consensus disorder prediction 119 142 - -
Cone5ag0321 414 CDD AP2 141 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0321 414 FunFam AP2-like ethylene-responsive transcription factor 140 199 - -
Cone5ag0321 414 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 260 - -
Cone5ag0321 414 MobiDBLite consensus disorder prediction 1 35 - -
Cone5ag0321 414 ProSiteProfiles AP2/ERF domain profile. 141 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0321 Cone-Chr5:1359024 Cone8ag0138 Cone-Chr8:727322 1.19E-61 dispersed
Cone1ag1335 Cone-Chr1:56459580 Cone5ag0321 Cone-Chr5:1359024 5.08E-180 wgd
Cone1ag0696 Cone-Chr1:6470469 Cone5ag0321 Cone-Chr5:1359024 7.79E-72 wgd
Cone10ag0265 Cone-Chr10:1265019 Cone5ag0321 Cone-Chr5:1359024 2.86E-62 wgd
Cone3ag0291 Cone-Chr3:1509147 Cone5ag0321 Cone-Chr5:1359024 2.83E-63 wgd
Cone5ag0321 Cone-Chr5:1359024 Cone5ag1204 Cone-Chr5:5461638 1.39E-69 wgd
Cone5ag0321 Cone-Chr5:1359024 Cone9ag1333 Cone-Chr9:10006464 4.32E-60 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46111 PF01553 Acyltransferase 4.10E-05 CL0228 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0321 K09284 - csv:101204131 248.825