Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0323 ATGGCGGAAGGTCCGACGAGTCCACCGGGCGGGAGTCACGAGAGCGGAGGCGAACAGAGCCCCAATACTGGCTTTCGAGAGCAGGATCGATACCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAGGCTTTGCCAGCCAACGGCAAGATCGCTAAGGACGCTAAGGACACCGTTCAGGAATGCGTATCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGTCAGAACGAGAAGAGGAAGACAATTAATGGTGATGATTTGTTGTGGGCAATGGTGACGTTAGGGTTCGAGGATTATGTTGATCCGCTTAAGGAGTACCTGAGGAGATACAGGGAGTTGGAGGGTGATACAAAAGGCGCTGCAGGTAGGAGTGGTGATGAATCTGTTAAAAGAGAAGCAGTTGGGGTCCTTCCTGGTCAGAGCACCCAGTTCGTTCCACAGGGGTCACTGAGCTACACCAATTCCCAAGGGCAGCATCTGGTCATTCCTTCCATACAACACCCCGAATAA 522 51.53 MAEGPTSPPGGSHESGGEQSPNTGFREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQNEKRKTINGDDLLWAMVTLGFEDYVDPLKEYLRRYRELEGDTKGAAGRSGDESVKREAVGVLPGQSTQFVPQGSLSYTNSQGQHLVIPSIQHPE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1363391 1366107 + Conep05aG0033400.1 Cone5ag0323 437341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0323 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 144 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone5ag0323 173 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Cone5ag0323 173 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Cone5ag0323 173 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Cone5ag0323 173 MobiDBLite consensus disorder prediction 151 173 - -
Cone5ag0323 173 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0323 173 MobiDBLite consensus disorder prediction 1 29 - -
Cone5ag0323 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Cone5ag0323 173 SUPERFAMILY Histone-fold 28 136 IPR009072 GO:0046982(InterPro)
Cone5ag0323 173 Gene3D Histone, subunit A 20 145 IPR009072 GO:0046982(InterPro)
Cone5ag0323 173 FunFam Nuclear transcription factor Y subunit B-3 20 140 - -
Cone5ag0323 173 MobiDBLite consensus disorder prediction 12 26 - -
Cone5ag0323 173 MobiDBLite consensus disorder prediction 151 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0323 K08065 - - rcu:8263378 266.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0323 Cone-Chr5:1363391 Cone8ag1366 Cone-Chr8:10907603 6.71E-55 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone5ag0323 Cone-Chr5:1363391 3.47E-83 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone5ag0323 Cone-Chr5:1363391 1.53E-76 wgd
Cone13ag1293 Cone-Chr13:9673921 Cone5ag0323 Cone-Chr5:1363391 1.24E-71 wgd
Cone19ag1279 Cone-Chr19:8705820 Cone5ag0323 Cone-Chr5:1363391 1.96E-79 wgd
Cone3ag0290 Cone-Chr3:1505735 Cone5ag0323 Cone-Chr5:1363391 4.50E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g452 . . . Bda15g00184 Bpe04g01683 Bpe15g01076 . Bma08g01142 . . . . Car04g01334 . . . . . . . . . . . . . . . . . . Cone1ag1336 Cone5ag0323 . . . . . . Blo13g00735 . Bda14g00336 Bda15g00376 Bpe04g01683 . . Bma08g00961 Sed07g2409 . . . . . . . . Bhi07g01026 Tan04g0390 Cmetu10g1537 . Hepe01g0881 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag1798 . 4 224 CCAAT-HAP3 Transcription Factor Family AT5G47670 54.4 3.6e-56 215.7
Cone1ag0062 . 1 224 CCAAT-HAP3 Transcription Factor Family AT5G47670 52.3 3.0e-55 212.6
Cone15ag1243 . 54 154 CCAAT-HAP3 Transcription Factor Family AT5G47670 86.1 2.3e-47 186.4
Cone14ag1222 . 1 90 CCAAT-HAP3 Transcription Factor Family AT5G47670 87.8 7.3e-41 164.9
Cone8ag1366 . 8 130 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.9 4.9e-37 152.1
Cone15ag1238 . 15 118 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.4 4.9e-37 152.1
Cone19ag1279 . 25 149 CCAAT-HAP3 Transcription Factor Family AT5G47670 54.8 1.4e-36 150.6
Cone15ag1243 . 56 183 CCAAT-HAP3 Transcription Factor Family AT1G21970 71.9 1.9e-49 193.4
Cone5ag1798 . 21 147 CCAAT-HAP3 Transcription Factor Family AT1G21970 68.5 1.8e-47 186.8
Cone1ag0062 . 1 147 CCAAT-HAP3 Transcription Factor Family AT1G21970 59.1 2.0e-46 183.3
Cone14ag1222 . 1 164 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.3 2.7e-43 172.9
Cone10ag0264 . 9 133 CCAAT-HAP3 Transcription Factor Family AT1G21970 55.5 1.4e-36 150.6
Cone3ag0290 . 9 133 CCAAT-HAP3 Transcription Factor Family AT1G21970 55.5 1.9e-36 150.2
Cone12ag1312 . 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.5 2.0e-53 206.1
Cone8ag1366 . 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.7 3.7e-52 201.8
Cone14ag1217 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.2 8.3e-52 200.7
Cone15ag1238 . 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.9 7.0e-51 197.6
Cone5ag0323 . 11 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.2 6.1e-47 184.5
Cone12ag0762 . 24 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.4 8.8e-46 180.6
Cone8ag0794 . 24 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.4 2.6e-45 179.1
Cone3ag0290 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.6 7.5e-45 177.6
Cone10ag0264 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.6 7.5e-45 177.6
Cone19ag1279 . 25 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.0 2.2e-44 176.0
Cone1ag1336 . 11 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 3.5e-42 168.7
Cone13ag1293 . 10 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.9 3.5e-42 168.7
Cone17ag0499 . 55 164 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.3 1.8e-38 156.4
Cone20ag0927 . 40 147 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.5 6.8e-38 154.5
Cone5ag1798 . 44 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.4 1.2e-37 153.7
Cone1ag0062 . 44 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.4 7.5e-37 151.0
Cone3ag0792 . 5 105 CCAAT-HAP3 Transcription Factor Family AT1G09030 77.7 2.8e-40 162.2
Cone10ag0770 . 5 107 CCAAT-HAP3 Transcription Factor Family AT1G09030 73.8 1.5e-38 156.4
Cone3ag0290 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.0 9.6e-50 193.7
Cone10ag0264 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.0 9.6e-50 193.7
Cone19ag1279 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.3 1.4e-48 189.9
Cone5ag0323 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.6 2.0e-47 186.0
Cone13ag1293 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.6 9.9e-47 183.7
Cone1ag1336 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.9 1.6e-44 176.4
Cone15ag1238 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.8 2.5e-42 169.1
Cone12ag1312 . 1 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 7.4e-42 167.5
Cone14ag1217 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.8 7.4e-42 167.5
Cone8ag1366 . 1 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 1.3e-41 166.8
Cone12ag0762 . 8 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.9 4.8e-41 164.9
Cone8ag0794 . 8 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.9 8.1e-41 164.1
Cone17ag0499 . 45 146 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.5 5.8e-39 157.9
Cone20ag0927 . 39 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.9 2.2e-38 156.0
Cone20ag0927 . 49 147 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.8 1.8e-43 172.9
Cone17ag0499 . 52 149 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.7 2.4e-43 172.6
Cone14ag0770 . 18 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.8 2.7e-39 159.1
Cone15ag1238 . 19 118 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 2.7e-39 159.1
Cone14ag1217 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 1.4e-38 156.8
Cone12ag0762 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 5.2e-38 154.8
Cone8ag0794 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 1.5e-37 153.3
Cone8ag1366 . 18 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.6 2.0e-37 152.9
Cone12ag1312 . 18 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.6 2.0e-37 152.9
Cone5ag0323 . 26 132 CCAAT-HAP3 Transcription Factor Family AT2G47810 64.5 3.3e-37 152.1
Cone3ag0290 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.1 4.4e-37 151.8
Cone10ag0264 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.1 4.4e-37 151.8
Cone10ag0770 . 5 106 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.7 9.7e-37 150.6
Cone10ag0264 . 1 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 9.4e-62 233.8
Cone3ag0290 . 1 151 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.8 8.8e-60 227.3
Cone19ag1279 . 7 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.3 4.4e-59 224.9
Cone5ag0323 . 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.8 1.3e-55 213.4
Cone13ag1293 . 1 128 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.5 3.7e-50 195.3
Cone1ag1336 . 1 133 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 3.2e-49 192.2
Cone14ag1217 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.4 6.8e-44 174.5
Cone15ag1238 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.4 8.9e-44 174.1
Cone12ag1312 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.2 4.4e-43 171.8
Cone8ag1366 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.2 5.8e-43 171.4
Cone12ag0762 . 27 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.6 6.0e-40 161.4
Cone8ag0794 . 27 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.6 1.7e-39 159.8
Cone20ag0927 . 38 151 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.2 4.3e-38 155.2
Cone17ag0499 . 40 153 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.2 5.6e-38 154.8
Cone5ag1798 . 45 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.3 9.5e-38 154.1
Cone1ag0062 . 30 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 59.2 4.7e-37 151.8
Cone8ag0794 . 14 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.9 1.5e-45 180.3
Cone12ag0762 . 14 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.9 2.0e-45 179.9
Cone3ag0290 . 4 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.2 5.5e-43 171.8
Cone10ag0264 . 4 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.2 5.5e-43 171.8
Cone19ag1279 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.9 7.1e-43 171.4
Cone14ag1217 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 3.5e-42 169.1
Cone8ag1366 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.5 6.1e-42 168.3
Cone12ag1312 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.5 6.1e-42 168.3
Cone15ag1238 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 6.1e-42 168.3
Cone9ag1230 . 1 162 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.1 8.7e-41 164.5
Cone13ag1293 . 7 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.9 4.3e-40 162.2
Cone5ag0323 . 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.8 5.7e-40 161.8
Cone17ag0499 . 55 149 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 6.9e-38 154.8
Cone20ag0927 . 53 151 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.7 6.9e-38 154.8
Cone1ag1336 . 26 124 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.7 1.2e-37 154.1
Cone14ag0770 . 8 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.3 2.0e-37 153.3
Cone14ag1217 . 1 137 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.4 2.4e-50 196.1
Cone15ag1238 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 1.2e-49 193.7
Cone8ag1366 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.0 1.0e-48 190.7
Cone12ag1312 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.3 5.0e-48 188.3
Cone3ag0290 . 11 135 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.8 1.2e-44 177.2
Cone10ag0264 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.3 1.5e-44 176.8
Cone12ag0762 . 22 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.6 1.5e-44 176.8
Cone19ag1279 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.7 3.4e-44 175.6
Cone8ag0794 . 22 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 4.4e-44 175.3
Cone5ag0323 . 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.3 9.8e-44 174.1
Cone13ag1293 . 19 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.6 8.3e-43 171.0
Cone1ag1336 . 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 5.4e-42 168.3
Cone17ag0499 . 55 149 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.9 1.5e-39 160.2
Cone20ag0927 . 48 147 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.0 1.9e-39 159.8
Cone5ag1798 . 37 158 CCAAT-HAP3 Transcription Factor Family AT5G47640 60.0 5.5e-39 158.3
Cone1ag0062 . 46 149 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.3 1.4e-37 153.7
Cone3ag0290 . 12 161 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.0 2.8e-61 232.3
Cone10ag0264 . 12 161 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.0 3.7e-61 231.9
Cone19ag1279 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.7 5.8e-59 224.6
Cone5ag0323 . 1 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 3.9e-55 211.8
Cone13ag1293 . 12 130 CCAAT-HAP3 Transcription Factor Family AT3G53340 84.3 4.5e-51 198.4
Cone1ag1336 . 12 133 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 4.6e-48 188.3
Cone8ag1366 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.4 1.4e-44 176.8
Cone12ag1312 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.4 1.4e-44 176.8
Cone14ag1217 . 6 117 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.1 2.6e-43 172.6
Cone15ag1238 . 6 117 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.1 3.4e-43 172.2
Cone12ag0762 . 7 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.8 1.6e-40 163.3
Cone8ag0794 . 27 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.6 1.4e-39 160.2
Cone20ag0927 . 38 151 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.8 2.3e-39 159.5
Cone17ag0499 . 40 153 CCAAT-HAP3 Transcription Factor Family AT3G53340 64.0 2.0e-38 156.4
Cone5ag1798 . 45 148 CCAAT-HAP3 Transcription Factor Family AT3G53340 68.3 1.3e-37 153.7
Cone1ag0062 . 45 148 CCAAT-HAP3 Transcription Factor Family AT3G53340 67.3 8.2e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46112 PF08137 DVL 4.40E-12 No_clan Cone TF