Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0323 ATGGCGGAAGGTCCGACGAGTCCACCGGGCGGGAGTCACGAGAGCGGAGGCGAACAGAGCCCCAATACTGGCTTTCGAGAGCAGGATCGATACCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAGGCTTTGCCAGCCAACGGCAAGATCGCTAAGGACGCTAAGGACACCGTTCAGGAATGCGTATCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGTCAGAACGAGAAGAGGAAGACAATTAATGGTGATGATTTGTTGTGGGCAATGGTGACGTTAGGGTTCGAGGATTATGTTGATCCGCTTAAGGAGTACCTGAGGAGATACAGGGAGTTGGAGGGTGATACAAAAGGCGCTGCAGGTAGGAGTGGTGATGAATCTGTTAAAAGAGAAGCAGTTGGGGTCCTTCCTGGTCAGAGCACCCAGTTCGTTCCACAGGGGTCACTGAGCTACACCAATTCCCAAGGGCAGCATCTGGTCATTCCTTCCATACAACACCCCGAATAA 522 51.53 MAEGPTSPPGGSHESGGEQSPNTGFREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQNEKRKTINGDDLLWAMVTLGFEDYVDPLKEYLRRYRELEGDTKGAAGRSGDESVKREAVGVLPGQSTQFVPQGSLSYTNSQGQHLVIPSIQHPE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1363391 1366107 + Conep05aG0033400.1 Cone5ag0323 437341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0323 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 144 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone5ag0323 173 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Cone5ag0323 173 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Cone5ag0323 173 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Cone5ag0323 173 MobiDBLite consensus disorder prediction 151 173 - -
Cone5ag0323 173 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0323 173 MobiDBLite consensus disorder prediction 1 29 - -
Cone5ag0323 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Cone5ag0323 173 SUPERFAMILY Histone-fold 28 136 IPR009072 GO:0046982(InterPro)
Cone5ag0323 173 Gene3D Histone, subunit A 20 145 IPR009072 GO:0046982(InterPro)
Cone5ag0323 173 FunFam Nuclear transcription factor Y subunit B-3 20 140 - -
Cone5ag0323 173 MobiDBLite consensus disorder prediction 12 26 - -
Cone5ag0323 173 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0323 Cone-Chr5:1363391 Cone8ag1366 Cone-Chr8:10907603 6.71E-55 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone5ag0323 Cone-Chr5:1363391 3.47E-83 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone5ag0323 Cone-Chr5:1363391 1.53E-76 wgd
Cone13ag1293 Cone-Chr13:9673921 Cone5ag0323 Cone-Chr5:1363391 1.24E-71 wgd
Cone19ag1279 Cone-Chr19:8705820 Cone5ag0323 Cone-Chr5:1363391 1.96E-79 wgd
Cone3ag0290 Cone-Chr3:1505735 Cone5ag0323 Cone-Chr5:1363391 4.50E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46112 PF08137 DVL 4.40E-12 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0323 K08065 - rcu:8263378 266.544