Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0326 ATGGAATACATCGGTAATGCTAAAACTGCTCTGAAAACACCATCACCACCAACAATGGCGGCTAATTCTGATCATGATGAGTTTTCTCCTCCCCCACCACCACAGGCTGCCGTGGCCACGGCGGTTGTGCTCAGTCCATGTGCCGCCTGCAAAATCCTTCGCCGGAGATGCGTCGAGAAATGCGTCTTAGCTCCTTACTTCCCTCCGACTGACCCTCGAAAGTTCACCATTGCTCATCGAGTCTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGAGCTTCCAGAAAGTCAGAGATCAGATGCAGTGAGCAGTATGGTATACGAAGCTAACGCAAGGATCAGAGATCCAGTTTACGGATGCGCCGGCGCAGTATGTCAGCTCCAGAAGCAAGTGAGCGAGCTGCAAGCTCAGTTAGCCAAGGCTCAAGCCGAGCTGGTCAACATGCAGCTCCAACAAGCCAATTTATTAGCCATTTTTTGCATGGAAATAAGACAATCTAATCACAACCATCATCATCACCATGATCATGATCTAGATCAACCAATCACCATGGTCGACAATATGCAGCATCAACCGTACCAGATTGACACAACCTGTTTTCTGGATGACTCTACTTCGGGTACATGGGAAACGCTCTGGACGTGA 648 48.92 MEYIGNAKTALKTPSPPTMAANSDHDEFSPPPPPQAAVATAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPRKFTIAHRVFGASNIIKFLQELPESQRSDAVSSMVYEANARIRDPVYGCAGAVCQLQKQVSELQAQLAKAQAELVNMQLQQANLLAIFCMEIRQSNHNHHHHHDHDLDQPITMVDNMQHQPYQIDTTCFLDDSTSGTWETLWT 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1378722 1379551 + Conep05aG0033700.1 Cone5ag0326 437344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0326 215 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Cone5ag0326 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 45 175 - -
Cone5ag0326 215 Coils Coil 125 152 - -
Cone5ag0326 215 Pfam Lateral organ boundaries (LOB) domain 46 143 IPR004883 -
Cone5ag0326 215 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0326 Cone-Chr5:1378722 Cone8ag1587 Cone-Chr8:11808670 4.34E-44 dispersed
Cone1ag1339 Cone-Chr1:56487374 Cone5ag0326 Cone-Chr5:1378722 1.09E-110 wgd
Cone11ag1283 Cone-Chr11:9521027 Cone5ag0326 Cone-Chr5:1378722 1.86E-61 wgd
Cone11ag1078 Cone-Chr11:8438866 Cone5ag0326 Cone-Chr5:1378722 1.29E-58 wgd
Cone18ag0498 Cone-Chr18:2433576 Cone5ag0326 Cone-Chr5:1378722 4.49E-62 wgd
Cone18ag0297 Cone-Chr18:1448190 Cone5ag0326 Cone-Chr5:1378722 1.86E-61 wgd
Cone5ag0326 Cone-Chr5:1378722 Cone9ag1307 Cone-Chr9:9810044 5.19E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46113 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0326 - - - 0.0