Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0328 ATGGGGAAGAAAGGGAGTTGGTTTTCTGCACTGAAAAAAGCTCTCAAAACCGACTCTAAAGAAAAGAAAGATCCAAAATCAAAGAAAAAATGGTTCGCAAATGACAAGAGCGCCAACGACCTGATTTTCTTATCCGAACAAATCCCACCCGACGATACCCCGGGCCCACTTCCCACACCCGAACCCGAAAATGAACAAACCAATCATTCATCCTCTGAGGCGGCCTTAAGCGCCACTCAAGCTGCCTCGGAATTCATTCGCCTCACCTCCATTCCCCATTACTCCGGAAAATCAAGGGATGAACTCGCCACTATTATAATTCAGACAGCATTCCGTGGTTATATGGCGAGGAGGGCATTAAGGGCATTGATAGGATTGGTTCGGTTAAAATCGTTGATGCAAAGGCATTCCGTCAAACGACAAGTGAGCACAACGTTAAGATGTATGCAAACTCTTGTTCGTGTTCAGTCTCAGGTTCGGGCAAGGCGGATTAGAATGTCGGAAGAGAATCAGGCTCTTCATAGACAGCTCGAGCAGAACCGAGACGAGGAGTTTCAGAAGTCAAGAGCTGCTGTGGCTGGAGATTGGGATCTTAGTACGAAATCAAAGGCGCAAATCGAAGCAAAAATGGCGAAAAAGAAAGAAGCTGCTAAGAGAAGAGAAAGGGCGATGGCTTATGCATTCTCTCATCAGCAATCGTGGAAGGGTTCTTCAAAGTCTTCGAACCCGACATTCATGGACACGAACAATCCGCACTGGGGCTGGAGTTGGTTAGAGAGATGGATGGCAGATCGTCCATGGGAGACCGAAAGTATTATTGATTACTATGATCGCATGTCGGTCAAGAGCGCAGTAAGCCATGTCGTTTCTGTCAAGAGTAACACAAGGACTAATACTACTACTCCTCCTTCTAGCGGACTGAAATCGGGCCGGCCCAACGTGAAACCATTGAGCCTGACTGTGCCCCGGGGGGAGGATGACTCGAGGACCCTACAAAGTGTCAAGTCGGACCGGTACCGGAGGCGTAGCATTGGGGGGTCGTCGGTTAAGGACGATAATCTAAGCCTTGCGAGTTCGAGCACGGGACCGAAATACACGGGGCCCACAAAACTGGCCAGGAGGGCCCAGTTGCCAAGCCCGAAACGGAAAGAGAATAATGTGAAAGTGGAAAAGGGATTGATGGGGTCCGCCGGTTCGGCCAAGAAACGGCTGACATTTGCTGCTGCTCCGGGTCTGTCGAGGAGGCATTCGGGTCCTCCCAATATGCATACTTGGATAGAGAACTGA 1287 49.65 MGKKGSWFSALKKALKTDSKEKKDPKSKKKWFANDKSANDLIFLSEQIPPDDTPGPLPTPEPENEQTNHSSSEAALSATQAASEFIRLTSIPHYSGKSRDELATIIIQTAFRGYMARRALRALIGLVRLKSLMQRHSVKRQVSTTLRCMQTLVRVQSQVRARRIRMSEENQALHRQLEQNRDEEFQKSRAAVAGDWDLSTKSKAQIEAKMAKKKEAAKRRERAMAYAFSHQQSWKGSSKSSNPTFMDTNNPHWGWSWLERWMADRPWETESIIDYYDRMSVKSAVSHVVSVKSNTRTNTTTPPSSGLKSGRPNVKPLSLTVPRGEDDSRTLQSVKSDRYRRRSIGGSSVKDDNLSLASSSTGPKYTGPTKLARRAQLPSPKRKENNVKVEKGLMGSAGSAKKRLTFAAAPGLSRRHSGPPNMHTWIEN 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1384439 1386680 - Conep05aG0033900.1 Cone5ag0328 437346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0328 428 Coils Coil 163 183 - -
Cone5ag0328 428 Pfam IQ calmodulin-binding motif 103 121 IPR000048 GO:0005515(InterPro)
Cone5ag0328 428 Coils Coil 203 223 - -
Cone5ag0328 428 MobiDBLite consensus disorder prediction 348 366 - -
Cone5ag0328 428 MobiDBLite consensus disorder prediction 328 347 - -
Cone5ag0328 428 MobiDBLite consensus disorder prediction 14 35 - -
Cone5ag0328 428 SMART iq_5 99 121 IPR000048 GO:0005515(InterPro)
Cone5ag0328 428 MobiDBLite consensus disorder prediction 292 308 - -
Cone5ag0328 428 MobiDBLite consensus disorder prediction 62 76 - -
Cone5ag0328 428 ProSiteProfiles IQ motif profile. 100 128 - -
Cone5ag0328 428 PANTHER IQ-DOMAIN 5-RELATED 4 378 - -
Cone5ag0328 428 MobiDBLite consensus disorder prediction 292 386 - -
Cone5ag0328 428 MobiDBLite consensus disorder prediction 14 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0328 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0985 Cone-Chr1:54935358 Cone5ag0328 Cone-Chr5:1384439 7.03E-14 dispersed
Cone5ag0328 Cone-Chr5:1384439 Cone5ag1312 Cone-Chr5:7581605 3.13E-26 dispersed
Cone13ag1287 Cone-Chr13:9640477 Cone5ag0328 Cone-Chr5:1384439 3.01E-82 wgd
Cone18ag0502 Cone-Chr18:2449046 Cone5ag0328 Cone-Chr5:1384439 2.71E-106 wgd
Cone19ag1272 Cone-Chr19:8667105 Cone5ag0328 Cone-Chr5:1384439 4.33E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1