Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0333 ATGGCTTCCAACACATTGATGAGCTGTGGGATAGCCACCGTGGCCTTCCCTTCCGTCCTCTCATCCTCCAAATCTAAATTCACCGCCGCAGTACCACTTTCCGGCAGCGCCAATGCCTCCTCTCGATTCGCCATGTCGGCCGAGTGGATGCCTGGCCAGCCTCGCCCCCCTTACCTCGACGGCTCTGCCCCAGGAGACTTTGGGTTTGACCCTCTTGGGCTAGGCGAAGTGCCAGAGAACCTCGAGAGATTTAAGGAGTCCGAACTCATTCACTGCAGATGGGCTATGCTTGCTGTGCCAGGGATTCTAGTACCAGAAGCACTTGGGCTTGGGAACTGGGTGAAGGCGCAAGAGTGGGCGGCAGTGCCAGGTGGGCAAGCTACGTACTTAGGGCAGCCCGTGCCGTGGGGCACCCTCCCTACAATATTGGCCATAGAGTTTCTTGCCATAGCGTTTGTAGAGCACCAGAGAAGCATAGAGAAGGACCCGGAAAAGAAGAAGTACCCAGGCGGTGCGTTTGACCCCTTGGGCTACTCTAAGGACCCAGAGAAGCTGAAGGAGTACAAGATAAAGGAGATCAAGAACGGACGGCTAGCGCTGTTGGCTTTTGTTGGGTTCTGCGTGCAGCAATCGGCTTACCCTGGGACTGGACCGTTGGAGAACTTGGCCACTCACTTGGCTGACCCGTGGCACAACAACATAGGCGATGTCATTATTCCTAAAGGAATCTTCCCTAATTGA 741 55.33 MASNTLMSCGIATVAFPSVLSSSKSKFTAAVPLSGSANASSRFAMSAEWMPGQPRPPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSIEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKIKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPKGIFPN 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1408962 1410218 + Conep05aG0034500.1 Cone5ag0333 437351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0333 246 FunFam Chlorophyll a-b binding protein, chloroplastic 50 236 - -
Cone5ag0333 246 Pfam Chlorophyll A-B binding protein 56 210 IPR022796 -
Cone5ag0333 246 Gene3D Chlorophyll a/b binding protein domain 50 236 - -
Cone5ag0333 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 14 234 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cone5ag0333 246 SUPERFAMILY Chlorophyll a-b binding protein 38 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0419 Cone-Chr3:2060046 Cone5ag0333 Cone-Chr5:1408962 2.26E-40 dispersed
Cone5ag0333 Cone-Chr5:1408962 Cone8ag0754 Cone-Chr8:7634588 1.25E-46 dispersed
Cone1ag1346 Cone-Chr1:56525339 Cone5ag0333 Cone-Chr5:1408962 4.91E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0333 K08907 - csv:101211428 472.626