Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0334 ATGAAGTTCTCTTTTCCTTGCTCAAAGTGCCTATCTTGCTCATCACAAACCGCTCATGATCACAACAGGATGCGAGGATCAGTACAGACTCTGCAACATGTTCATGCCTTCTCATACAATGAACTGAGAGCTGCCACAAATGGCTTCCATCCGTCCAATAAGATCGGTGAGGGAGGATTCGGTTCCGTTTATAAGGGAAAACTTCAAAACGGAAGAGATATTGCAGTGAAGGTGCTATCTTTGGAATCAAGGGAAGGAAACAGGGAATTCGTGTCTGAAATTGCTTCATTATCTAACATCAACCATGAAAATCTTGTCAGGTTTCATGGCAGTTGTGTCGATGGGCCTTTTCGGATCCTCGTTTATCAATACATGCCCAACAATAGCCTTGCTCAAACTTTTCTCGGCAGGGAGAAGAATAGAGCTAGATTTTTCTGGAAAACAAGGAGGGAAGTGTTAGTGGGAATTGGTAGGGGACTTGCTTATATTCATGAAGAAGTAAGACCACATATCACGCACCGTGACATTAAACCTAGTAACATACTCTTGGATTCCGATTTCACTCCTAAAGTATCAGATTTTGGTCTTTCTAAGCTGTTTTCCGACAGCAATAGCCACATCAGCACCCGAGTAGCCGGCACGCTAGGTTATGTTGCTCCCGAGTATGCGATTACAGGACATCTAACGAGGAAATCAGATGTGTATAGCTTTGGAGTTTTGCTGTTAGAGATAATCTCTGGAAGATCCCCAGTTGACTTTGATCTTCATCTTGGCGAGCACTATCTTGTCCAAAAGGCATGGGAGAAGTACAAGAGTGGAAGGGTTCTTGATCTAGTGGATCCAATGTTGAATGGGAATTATTCGGAAAAGGAAGCAGTCCGATTCCTTAAGGTAGGGTTACTGTGTGTGCAAGAAAGATATGGACTACGACCACGGATGTCGTTAGCCGTTAAAATGATGACCGGTGAGGCCGATATCAGCTACGTGATGATATCGGAACCCGGTCTCATCACCGATCTCATGGACATGAAAACAGAGCAGCAAAGACGGTGA 1053 44.16 MKFSFPCSKCLSCSSQTAHDHNRMRGSVQTLQHVHAFSYNELRAATNGFHPSNKIGEGGFGSVYKGKLQNGRDIAVKVLSLESREGNREFVSEIASLSNINHENLVRFHGSCVDGPFRILVYQYMPNNSLAQTFLGREKNRARFFWKTRREVLVGIGRGLAYIHEEVRPHITHRDIKPSNILLDSDFTPKVSDFGLSKLFSDSNSHISTRVAGTLGYVAPEYAITGHLTRKSDVYSFGVLLLEIISGRSPVDFDLHLGEHYLVQKAWEKYKSGRVLDLVDPMLNGNYSEKEAVRFLKVGLLCVQERYGLRPRMSLAVKMMTGEADISYVMISEPGLITDLMDMKTEQQRR 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1416258 1417944 - Conep05aG0034700.1 Cone5ag0334 437352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0334 350 CDD STKc_IRAK 55 322 - -
Cone5ag0334 350 FunFam Serine/threonine-protein kinase receptor 19 124 - -
Cone5ag0334 350 SUPERFAMILY Protein kinase-like (PK-like) 24 320 IPR011009 -
Cone5ag0334 350 Pfam Protein kinase domain 50 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0334 350 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 125 324 - -
Cone5ag0334 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0334 350 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 347 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone5ag0334 350 SMART serkin_6 49 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0334 350 Gene3D Phosphorylase Kinase; domain 1 19 124 - -
Cone5ag0334 350 Gene3D Transferase(Phosphotransferase) domain 1 125 330 - -
Cone5ag0334 350 ProSiteProfiles Protein kinase domain profile. 49 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0334 350 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0334 Cone-Chr5:1416258 Cone6ag0186 Cone-Chr6:887390 2.17E-126 dispersed
Cone1ag1347 Cone-Chr1:56531822 Cone5ag0334 Cone-Chr5:1416258 1.21E-90 wgd
Cone13ag1268 Cone-Chr13:9584144 Cone5ag0334 Cone-Chr5:1416258 1.33E-139 wgd
Cone19ag1256 Cone-Chr19:8610969 Cone5ag0334 Cone-Chr5:1416258 1.71E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82823 PF03469 XH 1.50E-53 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0334 - - - 0.0