Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0337 ATGGCTAAGGATTTGCAAGTGGCGGAGCAGGGGTCGTTCTCGGCCAAGGACTACCATGACCCGCCGCCAGCGCCACTCATCGACGCGGCGGAGCTGGGTAAATGGTCATTCTACAGAGCTCTAATTGCAGAGTTCATAGCCACTCTGCTCTTCCTCTACGTCACTGTTTTAACCGTGATCGGATACAAGAGCCAGATCGACACAGACCCATGCGGCGGAGTAGGAATTCTTGGCATCGCCTGGGCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACGGCTGGCATTTCCGGGGGGCATATTAACCCGGCCGTGACGTTCGGACTGTTACTGGCCCGAAAGGTGTCGTTGGTTCGGGCGGTGCTGTACATGGTGGCTCAGTGCTTAGGAGCCATAAGTGGTGTTGGTCTTGTCAAGGCTTTTCAAAAGCCTTTTTTTGATAGACATGGAGGTGGTGCTAACGAGCTTGCTCTTGGTTATAGCAAAGGTGTTGGATTAAGTGCAGAAATCATCGGCACCTTTGTCCTCGTTTACACAGTTTTCTCTGCTACTGATCCCAAGAGAAATGCCAGAGATTCTCACGTTCCAGTGTTGGCTCCACTCCCGATAGGATTCGCGGTGTTCATAGTTCACTTGGCAACCATTCCGATCACCGGAACAGGCATAAACCCGGCAAGGAGTCTAGGATCGGCTGTTATCTACAACCAGGACAAGGCTTGGGATGATCAGTGGATGTTTTGGGTTGGACCCTTTATCGGAGCAGCCATTGCCGCCTTCTATCACCAGTTCATCTTGAGAGCAGGAGCTGCTAAGGTTCTTGGATCGTTTAGGAGCAATCCTCATGTATGA 852 51.88 MAKDLQVAEQGSFSAKDYHDPPPAPLIDAAELGKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQIDTDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVLYMVAQCLGAISGVGLVKAFQKPFFDRHGGGANELALGYSKGVGLSAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGSAVIYNQDKAWDDQWMFWVGPFIGAAIAAFYHQFILRAGAAKVLGSFRSNPHV 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1440129 1441864 - Conep05aG0035000.1 Cone5ag0337 437355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0337 283 Pfam Major intrinsic protein 32 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag0337 283 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Cone5ag0337 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 279 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cone5ag0337 283 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Cone5ag0337 283 SUPERFAMILY Aquaporin-like 32 268 IPR023271 -
Cone5ag0337 283 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag0337 283 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag0337 283 PRINTS Major intrinsic protein family signature 245 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag0337 283 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag0337 283 PRINTS Major intrinsic protein family signature 205 227 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag0337 283 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag0337 283 FunFam Probable aquaporin PIP1-2 24 281 - -
Cone5ag0337 283 NCBIfam MIP family channel protein 43 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag0337 283 CDD MIP 39 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0337 Cone-Chr5:1440129 Cone8ag1291 Cone-Chr8:10585800 1.33E-151 dispersed
Cone1ag1352 Cone-Chr1:56550924 Cone5ag0337 Cone-Chr5:1440129 2.44E-197 wgd
Cone1ag0730 Cone-Chr1:6731374 Cone5ag0337 Cone-Chr5:1440129 6.09E-174 wgd
Cone10ag0252 Cone-Chr10:1213414 Cone5ag0337 Cone-Chr5:1440129 7.47E-176 wgd
Cone18ag0517 Cone-Chr18:2534956 Cone5ag0337 Cone-Chr5:1440129 5.57E-184 wgd
Cone3ag0280 Cone-Chr3:1462429 Cone5ag0337 Cone-Chr5:1440129 2.85E-78 wgd
Cone5ag0337 Cone-Chr5:1440129 Cone5ag1231 Cone-Chr5:5673499 1.57E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0337 K09872 - mdm:103428693 504.597