Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0346 ATGGGATCAATAGATCATCAAGATAACGGAAACGGCTTCGTTAGCGGATCGTTTTGCATCAACGAATCCGACCCGTTGAACTGGGGCATGGCAGCTGAGTCACTAAAAGGGAGCCATTTGGAAGAGGTGAAGAGAATGGTGGAGGAATATAGGAAGCCAATTGTGAGGCTTGGTGGTGAGACCTTGACCATAGCTCAGGTGGCTGCAATCGCGGGTCACAATGGTTCTGTATCGGTCGAGTTATCAGAGTCGGCTCGAGCCAGGGTCAAGGCCAGCAGTGACTGGGTTATGGACAGCATGAATAAAGGGACGGATAGTTATGGCGTCACTACTGGTTTTGGTGCAACCTCTCATAGGAGAACCAGACAAGGAGGTGCCCTTCAGAAGGAGCTTATTAGGTTCTTGAATGCTGGAATCTTTGGAAATGGGACAGAATCATGCCACACATTGCCCCACTCAGCAACCAGAGCAGCCATGCTGGTGAGGACCAATACACTGCTACAAGGCTACTCGGGGATTAGGTTTGAAATCTTAGAAGCCATCACCAAGCTGCTCAACAACAGCATAACACCCAGTCTCCCTCTCAGAGGCACCATCTCTGCTTCTGGAGACTTGGTCCCTCTCTCATACATTGCTGGGCTTTTGACAGGCAGGCCCAATTCAAAAGCTGTTGGGCCCAATGGAGAGCCCCTCAACCCCACGCAAGCCTTCGAACAAGCCGGTATCTCTACCGGGTTTTTCGAATTGCAGCCCAAAGAAGGCCTTGCTTTGGTCAATGGGACTGCAGTTGGCTCCGCTCTTGCTTCCATGACTCTTTTTGAAGCCAACGTTCTTGCACTACTTTCAGAAGTCTTGTCAGCAATCTTTGCTGAAGTCATGCAGGGAAAACCCGAGTTTACCGATCACTTGACGCATAGATTAAAACACCATCCGGGCCAAATCGAGGCTGCAGCCATAATGGAACACATTTTAGATGGAAGTTCATATGTCAAAGCAGCTAAGAAGTTGCATGAAACAGACCCTCTACAAAAGCCTAAGCAAGATAGGTATGCTCTAAGGACTTCTCCACAATGGCTCGGCCCACAAATTGAAGTCATCCGGCAAGCAACTAAAATGATCGAACGGGAAATAAACTCGGTCAATGACAACCCATTGATTGATGTTTCAAGGAATAAGGCTCTACATGGAGGCAATTTCCAAGGCACCCCAATTGGCGTGTCTATGGACAATAGCCGCCTAGCCATTGCTTCAATCGGCAAACTCATGTTTGCTCAATTTTCCGAGCTGGTCAATGACTTTTACAATAACGGGCTGCCTTCGAATCTCTCCGCGAGCCGGGATCCAAGCTTGGATTACGGGTTCAAAGGGGCCGAAATTGCAATGGCCTCGTATTGCTCGGAACTTCAATTCTTAGCCAATCCGGTAACAAACCATGTCCAAAGTGCGGAACAACATAACCAAGACGTGAACTCTTTGGGCTTGATTTCGGCTAGAAAGACAGCCGAGGCAGTGGATATATTGAAGCTCATGTCAACCACTTTCTTGGTCGGGTTATGTCAAGCTATTGATTTGAGGCACTTGGAGGAAAACTTGAGGAACACAGTGAAGAGCACAGTGAGTCAAGTAGCCAAGAAAGTACTTGTGATTGGATTCAATGGTGAGCTTCACCCGATAAGATTCTGTGAAAAAGACTTACTTACGATTGTTGATCGGGAATATGTTTTCGCTTATGTGGACGATCCCTGTAGTGCTACCTATCCATTGATGCAAAGGCTGAGGCAAGTTCTAGTGGAGCATTCTTTGAAGAATGAAAGGGAGACGAACCCGAGCAGTTCAATTTTTCAGAAGATTACCGAGTTTGAGGAAGAATTGAAGGCCGTTTTGCCTAAGGAAGTTGAAAATGTGAGGGCTGAATATGAGAGCGGAAATTCGACAATTGTGAACCAGATTAAGGAATGCAGGTCTTATCCATTGTACAAGTTTGTGAGGGAAACACTTGGGACAGGATTGTTAACAGGCGAGAAAGTGGTGTCGCCCGGTGAAGAATTCGACAAGGTTTTCTCCGCAATTTGTGAAGGGAAGCTCATCGATCCGTTGTTGGAGTGTTTGAGTGATTGGAATGGCGCTCCTCTTCCTATTAACTAA 2145 47.09 MGSIDHQDNGNGFVSGSFCINESDPLNWGMAAESLKGSHLEEVKRMVEEYRKPIVRLGGETLTIAQVAAIAGHNGSVSVELSESARARVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTRQGGALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRTNTLLQGYSGIRFEILEAITKLLNNSITPSLPLRGTISASGDLVPLSYIAGLLTGRPNSKAVGPNGEPLNPTQAFEQAGISTGFFELQPKEGLALVNGTAVGSALASMTLFEANVLALLSEVLSAIFAEVMQGKPEFTDHLTHRLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRQATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRDPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSTTFLVGLCQAIDLRHLEENLRNTVKSTVSQVAKKVLVIGFNGELHPIRFCEKDLLTIVDREYVFAYVDDPCSATYPLMQRLRQVLVEHSLKNERETNPSSSIFQKITEFEEELKAVLPKEVENVRAEYESGNSTIVNQIKECRSYPLYKFVRETLGTGLLTGEKVVSPGEEFDKVFSAICEGKLIDPLLECLSDWNGAPLPIN 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1476230 1480202 + Conep05aG0035900.1 Cone5ag0346 437364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0346 714 NCBIfam phenylalanine ammonia-lyase 24 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cone5ag0346 714 FunFam Phenylalanine ammonia-lyase 528 648 - -
Cone5ag0346 714 PANTHER HISTIDINE AMMONIA-LYASE 22 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cone5ag0346 714 Gene3D - 528 648 IPR023144 -
Cone5ag0346 714 Pfam Aromatic amino acid lyase 62 537 IPR001106 -
Cone5ag0346 714 CDD PAL-HAL 60 525 IPR001106 -
Cone5ag0346 714 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Cone5ag0346 714 FunFam Phenylalanine ammonia-lyase 15 261 - -
Cone5ag0346 714 FunFam Phenylalanine ammonia-lyase 262 544 - -
Cone5ag0346 714 Gene3D - 15 261 IPR024083 -
Cone5ag0346 714 SUPERFAMILY L-aspartase-like 24 713 IPR008948 GO:0003824(InterPro)
Cone5ag0346 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0346 Cone-Chr5:1476230 Cone7ag0757 Cone-Chr7:4676806 4.80E-293 dispersed
Cone1ag1357 Cone-Chr1:56574402 Cone5ag0346 Cone-Chr5:1476230 0 wgd
Cone11ag1308 Cone-Chr11:9664209 Cone5ag0346 Cone-Chr5:1476230 7.67E-123 wgd
Cone13ag1260 Cone-Chr13:9546345 Cone5ag0346 Cone-Chr5:1476230 0 wgd
Cone18ag0271 Cone-Chr18:1311305 Cone5ag0346 Cone-Chr5:1476230 0 wgd
Cone19ag1247 Cone-Chr19:8569861 Cone5ag0346 Cone-Chr5:1476230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0346 K10775 - rcu:8273543 1217.99