Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0357 ATGGGTCCTGCAGAGAACGATTCGAAACATGGGGTAGCGAGTCAACTCGTCGAGTCAATGAAGGAGATCTCCGCCTTTCCCGACTGCAATTCCGTCTGCAAGAAGATGTATTCAAACCTGATTCGGCGTGTGAAGCTCTTGAACCCTCTGTTTGAGGAATTGAGAGATGGCGATCAAAACCTTGGAGAAGAAGTAATCCAGGGTTTGGAATTGCTTGCAGTTTCTTTGGATTCTGCCAAAGAACTTCTCAGCTCGGTCAACCAATCCAGCAAGCTTTATCAGGCTCTGCGATTAGAGAAGATTACAGTTGAGTTTCAGTGCATTACAGAGCAAATCGAAATGGCATTGAGCAAGATTCCCTTTGACAAGCTTAATATTTCATTTGAGGTTCTAGAACAGTCTGCGCTTGTACATGCCCAATTCAAACGGGCAAAAGGAAACATTGACCCACCCGACGAACAATTAGAGAAGGACTTAGCCATAGCACAGGGTGAAAAAGAACCCGACCCCGCTACATTAATCCGGCTTGCAGAGAAGCTTCAACTCAGGACCATCAATGACATAAAGAATGAGTCACTTGCTTTCCATGATTGGGTTATCTCAAGCGGTGGAGATCCAGGCCAATATGACAAGATGACTTTCATTCTAAAGAAGCTTAACGACTATGCACTTACCCAGAACTTACAAACCGTCCCCTCTGATACTGAAAAGGGCATAATTAAGCACAAATCTCCTGTTATCCCGGACGATTTTAGGTGCCCCATTTCTCTTGAATTAATGAAAGATCCAGTGATCGTTTCCACTGGGCAGACTTATGAGCGATCTTGCATCCAAAAATGGCTTGATGCGGGCCACAAGACCTGTCCTAAAACACAGCAAACTCTCTTACATACAGCTTTAACACCTAACTATGTCTTGAAGAGTCTTATTGCTCTATGGTGTGAGAGCAATGGTGTAGAGCTACCCAAAAAGCATGGCCGGAACAAGAAATTCTCTGAATGTGATCGATCTGCTATCAATGCGTTACTAGAAAAACTAGCAAACGGGTCTTTAGAACAGCAAAGAGCAGCTGCTGGTGAGCTCCGTTTGCTAGCGAAAAGGAACAGCGATAATCGAGTCTGTATAGCAGAAGCCGGGGCAATTCCACTCCTTGTAGAATTACTATCTTCCCAAGATCCAAGAACCCAAGAACATGCAGTAACAGCTCTTCTAAATCTTTCTATAAATGACACGAACAAAGGAACTATTGTTAATGCAGGTGCTATACCTGATATAGTAGACGTGCTGAAAAATGGAAGCATGGAGGCAAGAGAAAATGCGGCTGCTACCCTTTTCAGTTTATCAGTTGTAGATGAGAATAAGGTGGCGATTGGAGCAGCTGGGGCAATTCCGGCTCTGATAAGATTGTTTTGTGAGGGCACTCCTAGAGGGAAGAAAGATGCCGCCACAGCTATTTTCAATCTTTCAATTTATCAGGGGAACAAGGCAAGGGCCATAAAGGCTGGGATTGTGAGCCCGCTTATGGGGTTTTTGAAAGATGTGGGAGGTGGGATGGTAGATGAGGCATTGGCGATTTTAGCGATTCTTTCAAGCCATCAAGAAGGGAAGATGGCGATTGCTCAGGCTGAGCCAATACCGGTTCTGGTGGAGTTTATTAAGACAGGTTCTCCAAGGAACCGGGAAAATGCGGCAGCTGTGTTGTGGTCAATATGTACTGGGGATTTGGAGCAGTTGAAATTAGCGAGGGAGCATGGGGCAGAAGCTGCATTGAAGCATCTTACGGAGAATGGGACAGATAGAGCAAAGAGAAAAGCCGGCAGCCTTTTAGAGATTCTTCAACGCACTGAAGCACCTGTTAATGTATGA 1866 45.02 MGPAENDSKHGVASQLVESMKEISAFPDCNSVCKKMYSNLIRRVKLLNPLFEELRDGDQNLGEEVIQGLELLAVSLDSAKELLSSVNQSSKLYQALRLEKITVEFQCITEQIEMALSKIPFDKLNISFEVLEQSALVHAQFKRAKGNIDPPDEQLEKDLAIAQGEKEPDPATLIRLAEKLQLRTINDIKNESLAFHDWVISSGGDPGQYDKMTFILKKLNDYALTQNLQTVPSDTEKGIIKHKSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKHGRNKKFSECDRSAINALLEKLANGSLEQQRAAAGELRLLAKRNSDNRVCIAEAGAIPLLVELLSSQDPRTQEHAVTALLNLSINDTNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVVDENKVAIGAAGAIPALIRLFCEGTPRGKKDAATAIFNLSIYQGNKARAIKAGIVSPLMGFLKDVGGGMVDEALAILAILSSHQEGKMAIAQAEPIPVLVEFIKTGSPRNRENAAAVLWSICTGDLEQLKLAREHGAEAALKHLTENGTDRAKRKAGSLLEILQRTEAPVNV 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1515471 1518017 + Conep05aG0037100.1 Cone5ag0357 437375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0357 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Cone5ag0357 621 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone5ag0357 621 Pfam U-box domain 247 317 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone5ag0357 621 SMART arm_5 491 531 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 SMART arm_5 409 449 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 SMART arm_5 450 490 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 SMART arm_5 368 408 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 SMART arm_5 532 572 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 SUPERFAMILY ARM repeat 335 612 IPR016024 -
Cone5ag0357 621 FunFam RING-type E3 ubiquitin transferase 338 455 - -
Cone5ag0357 621 SUPERFAMILY RING/U-box 247 322 - -
Cone5ag0357 621 Gene3D - 323 619 IPR011989 -
Cone5ag0357 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 320 IPR013083 -
Cone5ag0357 621 CDD RING-Ubox_PUB 248 300 IPR045210 -
Cone5ag0357 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 379 421 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 FunFam RING-type E3 ubiquitin transferase 9 122 - -
Cone5ag0357 621 PANTHER U BOX DOMAIN-CONTAINING 34 614 - -
Cone5ag0357 621 Pfam Armadillo/beta-catenin-like repeat 368 407 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 Pfam Armadillo/beta-catenin-like repeat 451 489 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 Pfam Armadillo/beta-catenin-like repeat 533 572 IPR000225 GO:0005515(InterPro)
Cone5ag0357 621 SMART Ubox_2 250 313 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone5ag0357 621 FunFam RING-type E3 ubiquitin transferase 456 618 - -
Cone5ag0357 621 Gene3D - 12 122 IPR036537 GO:0007166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1246 Cone-Chr11:9316383 Cone5ag0357 Cone-Chr5:1515471 1.48E-155 dispersed
Cone17ag0886 Cone-Chr17:7020764 Cone5ag0357 Cone-Chr5:1515471 3.39E-12 dispersed
Cone17ag1452 Cone-Chr17:9852855 Cone5ag0357 Cone-Chr5:1515471 6.39E-92 dispersed
Cone18ag0344 Cone-Chr18:1688095 Cone5ag0357 Cone-Chr5:1515471 8.10E-130 dispersed
Cone19ag0775 Cone-Chr19:6313333 Cone5ag0357 Cone-Chr5:1515471 4.43E-56 dispersed
Cone1ag0041 Cone-Chr1:236540 Cone5ag0357 Cone-Chr5:1515471 3.72E-15 dispersed
Cone4ag1146 Cone-Chr4:9843711 Cone5ag0357 Cone-Chr5:1515471 6.78E-44 dispersed
Cone5ag0357 Cone-Chr5:1515471 Cone5ag1640 Cone-Chr5:11573290 2.20E-57 dispersed
Cone5ag1820 Cone-Chr5:12848343 Cone5ag0357 Cone-Chr5:1515471 2.08E-14 dispersed
Cone1ag1368 Cone-Chr1:56616173 Cone5ag0357 Cone-Chr5:1515471 3.49E-27 transposed
Cone1ag1367 Cone-Chr1:56614275 Cone5ag0357 Cone-Chr5:1515471 2.79E-232 wgd
Cone5ag0357 Cone-Chr5:1515471 Cone9ag1248 Cone-Chr9:9156608 1.23E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0357 K27628 - cit:102621804 900.197