Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0370 ATGATATCAATGACAAAAGCAAATACTCCCTCCTCCATAGTTATCATTCCTTCAAGATTGCTTCTAACAACAACCTGCATTTTCTTAATATGCACAATAGAAGCATTAATCTTTCCTTTCTCCAGAGCTAACTCCTACAACCTCTCCCTCCCTCATCAGCACCCAAATCCTGATGCTGTTGTTCAAGAAGTTCAAAGGAGAGTCAATGAATCTCTCACCAGAAGACGAACACTATCCGTCCAAACGAAGGACCAAACTTTTTCCTGTCTCACTGGAAACCCAATAGACGATTGCTGGCGTTGCGACCCAAACTGGCAAACAAACCGTCAAAAACTCGCCGACTGTGGCATAGGGTTTGGCCAAGACGCCATGGGAGGCAGAGGAGGTCAGTTCTACATAGTCTCAGACTCCTCTGACTCAGACACAGCAAACCCAAAACCAGGCACCCTCCGACACGCCGTAATCCAATTCGAACCCCTCTGGATAATCTTCTCATCAGACATGTCGATCAAACTCAAACACGAGCTCATTTTCAATAGCTACAAAACAATCGACGGTCGTGGCGCAAACGTGGAAATCACCGGCGGGGGTTGCATAACGCTGCAGTACGTGTCAAACATAATAATCCACAACATCCGCGTCCACCACTGTAAACCCACGGGCAACTCGATCATACGGTCCACCCCAACACACGTAGGATTCCGTGGCAGATCCGACGGCGATGGTATCTCCATCTTTAGCTCCCGCAAAATCTGGATCGACCATTGCTCTTTGTCCTACTGTACAGACGGTTTGATCGACGCCATAATGGGGTCCACCGGAATAACCATTTCTAACAACTATTTTTCACATCACGACGAGGTCATGTTATTGGGCCATAACGATGCGTACGTAGCGGATTCAGGCATGCAAGTTACTATATCTTTTAACCACTTTGGTGAGGCGCTGGTGCAGCGTATGCCGCGGTGTAGACGCGGGTATATACACGTGGTGAATAATGATTTCACGGCATGGGAGATGTATGCTATTGGCGGCAGTGCTAGCCCAACGATTAATAGTCAGGGGAATAGGTACACTGCGCCGACGGATCCTAATGCGAAGGAGGTGACGAAGAGGGTGGAGACAGAGGAGAGAGAGTGGACGGATTGGAATTGGAGGACGGAGGGGGACATTATGGTAAATGGGGCTTACTTCGTTCCTTCTGGGTTTGGGCTGAGCTCTCAGTACGCAAAGGCCACTAGCGTGGAGCCCAAGTCCGCTGCTCTTATCGATCAGCTTACAATGACTGCCGGGGTTCTTGGTGCGCCCAGGGATGCTAGTCAGGGCATTGCAAATCCAGGATTTAGCAGTAGCAGCGGAGGCAGTAGCGTTGGCCCCCCCACCACCACCACCACCACTGCCACCAACAATGGTAATAATCCAGGAACGGATACTGGAGATGGAGACTTCTTTGGAATGATATTCGGGGGTGGCGCCAATAGTGGTACATCATGGCCAGCAGGATTGTGTATTGACCCAGTCCTGTTGTGTCTGATATATATTCTAATTTTGTATACAACCACCAATTTGGGTGATTTGTTGTCATTACAATTGCTATTATCATTATAG 1608 48.63 MISMTKANTPSSIVIIPSRLLLTTTCIFLICTIEALIFPFSRANSYNLSLPHQHPNPDAVVQEVQRRVNESLTRRRTLSVQTKDQTFSCLTGNPIDDCWRCDPNWQTNRQKLADCGIGFGQDAMGGRGGQFYIVSDSSDSDTANPKPGTLRHAVIQFEPLWIIFSSDMSIKLKHELIFNSYKTIDGRGANVEITGGGCITLQYVSNIIIHNIRVHHCKPTGNSIIRSTPTHVGFRGRSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHNDAYVADSGMQVTISFNHFGEALVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSASPTINSQGNRYTAPTDPNAKEVTKRVETEEREWTDWNWRTEGDIMVNGAYFVPSGFGLSSQYAKATSVEPKSAALIDQLTMTAGVLGAPRDASQGIANPGFSSSSGGSSVGPPTTTTTTATNNGNNPGTDTGDGDFFGMIFGGGANSGTSWPAGLCIDPVLLCLIYILILYTTTNLGDLLSLQLLLSL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1575229 1577897 - Conep05aG0038400.1 Cone5ag0370 437388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0370 535 Pfam Pectate lyase 173 356 IPR002022 -
Cone5ag0370 535 SUPERFAMILY Pectin lyase-like 82 407 IPR011050 -
Cone5ag0370 535 Gene3D - 92 434 IPR012334 -
Cone5ag0370 535 FunFam Pectate lyase 92 434 - -
Cone5ag0370 535 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Cone5ag0370 535 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Cone5ag0370 535 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cone5ag0370 535 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Cone5ag0370 535 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Cone5ag0370 535 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cone5ag0370 535 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Cone5ag0370 535 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cone5ag0370 535 PANTHER PECTATE LYASE 18-RELATED 33 434 IPR045032 GO:0030570(InterPro)
Cone5ag0370 535 SMART amb_all 167 364 IPR002022 -
Cone5ag0370 535 MobiDBLite consensus disorder prediction 443 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0217 Cone-Chr10:1059074 Cone5ag0370 Cone-Chr5:1575229 1.03E-220 dispersed
Cone3ag0312 Cone-Chr3:1590028 Cone5ag0370 Cone-Chr5:1575229 5.49E-40 dispersed
Cone5ag0370 Cone-Chr5:1575229 Cone7ag0370 Cone-Chr7:1620380 2.01E-186 dispersed
Cone1ag1378 Cone-Chr1:56664382 Cone5ag0370 Cone-Chr5:1575229 0 wgd
Cone1ag0495 Cone-Chr1:4834236 Cone5ag0370 Cone-Chr5:1575229 2.38E-49 wgd
Cone11ag1037 Cone-Chr11:8205776 Cone5ag0370 Cone-Chr5:1575229 1.05E-248 wgd
Cone18ag0538 Cone-Chr18:2654646 Cone5ag0370 Cone-Chr5:1575229 2.84E-237 wgd
Cone3ag0244 Cone-Chr3:1304395 Cone5ag0370 Cone-Chr5:1575229 1.11E-220 wgd
Cone5ag0370 Cone-Chr5:1575229 Cone5ag1260 Cone-Chr5:6004920 6.76E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0370 K01728 - vvi:100246124 698.738