Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0384 ATGAATTGTCTTCAGAACTTTCTGAGATCCTCTCCGTTACCTCTGCAAAGCTTCAAACACCATGAAAGAAAGCTGAGCTTCTCCCCCTGTGCACTGGGAGTAATGAATGATGATCTGCATCGACGCAAATACGTGAAGGCAATATCTGGTTCAACCTCGAGTGCTGAGATGAGTGGTACGGAAACAGGGGAGGAGAAATCTGAGCTATACAGCAACAACATGACAGAAGCTATGGGTGCTGTATTGACTTATAGGCATGAGCTCGGAATGAACTACAATTTCATTCATCCAGATCTTATAGTGGGGTCATGCTTACAGACTCCAGAAGATGTTGACAAGCTTCGTCTAATAGGAGTCAAAACGATCTATTGCTTACAACAGAATTCAGATTTGGAATATTTTGGGGTTGATATTGGTGCCATAAGAGAGTATGCAAGTACACATGATGATATTGAACACTTGCGTGCTGAAATAAGGGATTTTGATTCGTATGATTTGAGGCTAAGGTTACCTGCTGTGTTAAGCAAATTATACAAGGCTATAAACCGAAACGGAGGGGTTACTTATGTACATTGCACCGCTGGACTTGGAAGAGCACCAGCTGTTGCGCTGGCATATATGTTCTGGGTTCAGGGCTACAAACTTAGCAATGCTCATCAACTACTGCAGAGCAAACGGCCATGCTTCCCAAAGCTGGATGCAATAAAAAGTGCAACTGCTGATATTCTTACAGGGTTCAGGAAGAAGCACGTCATTTTGAAATGGTCGAATAGCAATTGCTCTACTGTCGAGATTTCTGGACTTGACGTTGGATGGGGTCAGAGAATACCTTTAAACCTCAACAAAGAACAAGGTTCCTGGATACTTAAGAGGGAATTGCCGGAAGGACGTTATGAATACAAGTACATTATAGATGGTGAATGGACACTCAATACGTCCGAGCCTGTCACCTCTCCTAACAAGGATGGCCATGTCAATAATTTTGCTCAAGTTGTTGATGATGATACAAATAGTGAAGGGGCAAACCTGCAAAAGAAGCTGGCCGGAGATGATCCGGAGCTTATGACCGAGGAAAGAGAGAAAATAAGACAATTTCTTGAAGCTTATCCAGAGGATGAGTGA 1122 42.96 MNCLQNFLRSSPLPLQSFKHHERKLSFSPCALGVMNDDLHRRKYVKAISGSTSSAEMSGTETGEEKSELYSNNMTEAMGAVLTYRHELGMNYNFIHPDLIVGSCLQTPEDVDKLRLIGVKTIYCLQQNSDLEYFGVDIGAIREYASTHDDIEHLRAEIRDFDSYDLRLRLPAVLSKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVQGYKLSNAHQLLQSKRPCFPKLDAIKSATADILTGFRKKHVILKWSNSNCSTVEISGLDVGWGQRIPLNLNKEQGSWILKRELPEGRYEYKYIIDGEWTLNTSEPVTSPNKDGHVNNFAQVVDDDTNSEGANLQKKLAGDDPELMTEEREKIRQFLEAYPEDE 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1640964 1644057 - Conep05aG0039800.1 Cone5ag0384 437402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0384 373 SMART dsp_5 91 241 IPR020422 GO:0006470(InterPro)
Cone5ag0384 373 ProSiteProfiles Dual specificity protein phosphatase domain profile. 91 248 IPR020422 GO:0006470(InterPro)
Cone5ag0384 373 CDD E_set_AMPKbeta_like_N 251 331 - -
Cone5ag0384 373 Pfam Glycogen recognition site of AMP-activated protein kinase 251 335 IPR032640 -
Cone5ag0384 373 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 233 IPR029021 -
Cone5ag0384 373 SUPERFAMILY E set domains 250 331 IPR014756 -
Cone5ag0384 373 CDD DSP_laforin-like 90 237 IPR045204 GO:0019203(InterPro)
Cone5ag0384 373 Gene3D Immunoglobulins 246 336 IPR013783 -
Cone5ag0384 373 Pfam Dual specificity phosphatase, catalytic domain 144 229 IPR000340 GO:0016311(InterPro)
Cone5ag0384 373 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 84 266 - -
Cone5ag0384 373 Gene3D Protein tyrosine phosphatase superfamily 84 365 IPR029021 -
Cone5ag0384 373 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 227 IPR000387 GO:0016311(InterPro)
Cone5ag0384 373 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 246 336 - -
Cone5ag0384 373 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 372 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0384 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1361 Cone-Chr18:9351572 Cone5ag0384 Cone-Chr5:1640964 1.14E-29 dispersed
Cone1ag1626 Cone-Chr1:57658709 Cone5ag0384 Cone-Chr5:1640964 4.51E-21 dispersed
Cone5ag0149 Cone-Chr5:631863 Cone5ag0384 Cone-Chr5:1640964 4.43E-44 dispersed
Cone1ag1393 Cone-Chr1:56720858 Cone5ag0384 Cone-Chr5:1640964 4.25E-249 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone20ag0690 . 24 264 Protein tyrosine phosphatase (PTP) family AT1G71860 63.9 2.6e-87 319.7
Cone13ag0255 . 22 932 Protein tyrosine phosphatase (PTP) family AT5G23720 63.5 0.0e+00 1077.0
Cone14ag0823 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 59.3 4.5e-45 178.3
Cone12ag1514 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 79.3 2.5e-73 272.3
Cone8ag1559 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 7.9e-72 267.3
Cone5ag0384 . 90 373 Protein tyrosine phosphatase (PTP) family AT3G52180 69.7 1.3e-116 416.8
Cone1ag1393 . 90 371 Protein tyrosine phosphatase (PTP) family AT3G52180 67.0 1.2e-109 393.7
Cone5ag0149 . 21 288 Protein tyrosine phosphatase (PTP) family AT3G10940 70.6 5.6e-112 401.4
Cone1ag1626 . 1 172 Protein tyrosine phosphatase (PTP) family AT3G10940 57.8 4.1e-54 209.1
Cone18ag1361 . 140 587 Protein tyrosine phosphatase (PTP) family AT3G01510 70.8 2.0e-196 682.6
Cone11ag0116 . 136 534 Protein tyrosine phosphatase (PTP) family AT3G01510 61.7 6.3e-158 554.7
Cone12ag1505 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 55.0 7.4e-71 264.6
Cone5ag1838 . 22 186 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 5.0e-67 251.9
Cone10ag1396 . 45 206 Protein tyrosine phosphatase (PTP) family AT2G32960 62.2 4.2e-66 248.8
Cone8ag1552 . 3 194 Protein tyrosine phosphatase (PTP) family AT2G32960 55.5 1.0e-64 244.2
Cone5ag0937 . 4 161 Protein tyrosine phosphatase (PTP) family AT2G32960 52.1 8.2e-54 208.0
Cone12ag0399 . 1 334 Protein tyrosine phosphatase (PTP) family AT2G35680 57.0 1.7e-99 360.1
Cone8ag0418 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 3.2e-98 355.9
Cone4ag0974 . 12 267 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 1.8e-77 287.0
Cone7ag1160 . 25 267 Protein tyrosine phosphatase (PTP) family AT2G35680 53.5 4.1e-77 285.8
Cone4ag0974 . 30 219 Protein tyrosine phosphatase (PTP) family AT5G56610 51.5 1.6e-46 183.3
Cone8ag0418 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 51.4 1.4e-42 170.2
Cone12ag0399 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 50.9 4.0e-42 168.7
Cone5ag1838 . 15 187 Protein tyrosine phosphatase (PTP) family AT4G03960 71.1 3.8e-75 278.5
Cone12ag1505 . 40 209 Protein tyrosine phosphatase (PTP) family AT4G03960 74.7 5.0e-75 278.1
Cone10ag1396 . 23 206 Protein tyrosine phosphatase (PTP) family AT4G03960 69.5 3.6e-73 271.9
Cone8ag1552 . 16 194 Protein tyrosine phosphatase (PTP) family AT4G03960 70.9 1.3e-70 263.5
Cone5ag0937 . 15 165 Protein tyrosine phosphatase (PTP) family AT4G03960 63.6 4.0e-56 215.3
Cone1ag1691 . 16 130 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 3.4e-39 159.1
Cone5ag0937 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 2.4e-80 295.8
Cone1ag1691 . 16 158 Protein tyrosine phosphatase (PTP) family AT3G02800 72.7 4.2e-61 231.9
Cone5ag1838 . 24 182 Protein tyrosine phosphatase (PTP) family AT3G02800 62.9 6.7e-59 224.6
Cone12ag1505 . 45 204 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 5.7e-58 221.5
Cone10ag1396 . 36 203 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 1.3e-57 220.3
Cone8ag1552 . 45 196 Protein tyrosine phosphatase (PTP) family AT3G02800 63.8 1.4e-56 216.9
Cone1ag1316 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 70.2 5.2e-67 253.4
Cone5ag0297 . 31 219 Protein tyrosine phosphatase (PTP) family AT3G55270 69.1 5.2e-67 253.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone3ag0992 . 1 618 Protein tyrosine phosphatase (PTP) family AT3G19420 66.2 8.9e-232 800.4
Cone10ag1013 . 1 515 Protein tyrosine phosphatase (PTP) family AT3G19420 72.4 8.1e-217 750.7
Cone8ag0143 . 83 664 Protein tyrosine phosphatase (PTP) family AT3G19420 60.7 9.0e-200 694.1
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone11ag1360 . 68 247 Protein tyrosine phosphatase (PTP) family AT3G44620 65.5 1.5e-71 266.9
Cone18ag0218 . 43 248 Protein tyrosine phosphatase (PTP) family AT3G44620 59.4 1.5e-71 266.9
Cone13ag1383 . 1 677 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 9.6e-288 986.5
Cone19ag1373 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.4e-285 978.0
Cone19ag1373 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-261 899.0
Cone13ag1383 . 5 677 Protein tyrosine phosphatase (PTP) family AT5G01290 64.6 1.9e-259 892.5
Cone13ag1383 . 79 688 Protein tyrosine phosphatase (PTP) family AT5G28210 56.8 1.2e-188 657.1
Cone19ag1373 . 75 684 Protein tyrosine phosphatase (PTP) family AT5G28210 56.5 4.4e-186 648.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005805 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37