Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0387 ATGTTAGCGATGGAGAAGGACTTTGATTGCAAGTTAAGGATTCGAGGGAACTCCTCTAATGGCGGGAGTGTCCAGAGATCGCAAAGCTTTGCGTTTCGAGCTCCGCAAGAGAATTTCACCATCCACGATTTCGAATTGGGCAAAATTTATGGCGTTGGCTCCTATTCTAAGGTTGTGAGGGCAAAGAAGACGGACTCAGGCATAGTTTATGCACTGAAGATAATGGACAAAAAGTTCATAACTAAAGAAAAGAAAACTGCTTATGTAAAGCTGGAACGTATTGTACTTGATCAACTCGATCATCCTGGCGTTGTCAAACTATTTTTCACATTTCAAGACACTTATTCACTCTATATGGCGCTTGAATCATGTGAAGGTGGGGAGCTTTTTGATCAAATTACCCGAAAAGGTCGATTGACAGAAGATGAAGCTCGATTCTATGCAGCAGAAGTCGTGGATGCTCTTGAATACATACACGGTATGGGATTAATACATCGAGATATTAAGCCTGAGAATTTGCTACTTACTTCCAATGGACATATTAAAATTGCCGATTTTGGGAGCGTAAAGCCCACACCAGATAACCCAATTCCCATTCTTCCAAATGACGCATCAGAAGGTAAGGCTTGTACATTTGTGGGCACGGCTGCTTATGTTCCTCCAGAAGTTCTTAATTCTTGTCCCCCAACTTTTGGAAATGACCTCTGGGCACTTGGCTGCACCTTGTACCAAATGCTTTCAGGGACAAATCCATTCAAAGATGCGAGTGAATGGCTTATTTTCCAAAGAATCATAGCACGGGATGTAAAATATCCTGATTATTTCTCAGATCAAGCTAGAGATCTCATTGACCGATTGTTGGATTTAGATCCCAACAAGAGACCTGGTGCGGGACCCGATGGTTATTCTGTGCTTAAGAAGCATCCCTTCTTTAAGGGGGTTGACTGGAAGAATATTAGCCAGCAAAGCCCTCCAAAGCTAGCTTTGGAAGAAGCAGCTCAAGCAAGTGAGGAGGAGGATTATGGCGACGATTCTTCATGGAACCCTTCACATGTTGGAGATGGTGTAAAGGCCAGTCAAGATGACGGGAAGACTGGAGCTGCGGCCTCATCTTCTGAAGAATCCCATAATGTCACTAGACTTGCCTCAATCGACTCCTTTGATTCCAAATGGCAACAATTCCTCGAGCCAGGAGAATCCGTACTCATGATCTCATTGGTGAAGAAAATTCAGACACTAACAAGCAAAAAGGTCCAGCTTATCCTAACCAACAAACCTAAATTGATATATGTGGATCCTTCAAAGCTGATTATTAAGGGGCAAATACTTTGGTCCGACAATCCTAATGAGCTCAGCATTCAAGTGACAAGTACTTCACATTTCAAGATTTGCACGGCAAAGAAGATTGTATCATTTGAGGATGCAAAACAAAGAGCATGGCAGTGGAAGAAGGCGATAGAGGCACTTCAGAACCAATGA 1479 42.87 MLAMEKDFDCKLRIRGNSSNGGSVQRSQSFAFRAPQENFTIHDFELGKIYGVGSYSKVVRAKKTDSGIVYALKIMDKKFITKEKKTAYVKLERIVLDQLDHPGVVKLFFTFQDTYSLYMALESCEGGELFDQITRKGRLTEDEARFYAAEVVDALEYIHGMGLIHRDIKPENLLLTSNGHIKIADFGSVKPTPDNPIPILPNDASEGKACTFVGTAAYVPPEVLNSCPPTFGNDLWALGCTLYQMLSGTNPFKDASEWLIFQRIIARDVKYPDYFSDQARDLIDRLLDLDPNKRPGAGPDGYSVLKKHPFFKGVDWKNISQQSPPKLALEEAAQASEEEDYGDDSSWNPSHVGDGVKASQDDGKTGAAASSSEESHNVTRLASIDSFDSKWQQFLEPGESVLMISLVKKIQTLTSKKVQLILTNKPKLIYVDPSKLIIKGQILWSDNPNELSIQVTSTSHFKICTAKKIVSFEDAKQRAWQWKKAIEALQNQ 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1653954 1657218 + Conep05aG0040100.1 Cone5ag0387 437405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0387 492 SUPERFAMILY PH domain-like 305 491 - -
Cone5ag0387 492 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Cone5ag0387 492 Pfam PH domain 389 492 IPR033931 -
Cone5ag0387 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0387 492 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Cone5ag0387 492 SUPERFAMILY Protein kinase-like (PK-like) 26 328 IPR011009 -
Cone5ag0387 492 FunFam 3-phosphoinositide-dependent protein kinase 2-like 42 127 - -
Cone5ag0387 492 Pfam Protein kinase domain 45 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0387 492 FunFam 3-phosphoinositide-dependent protein kinase 1 361 492 - -
Cone5ag0387 492 Gene3D - 356 492 IPR011993 -
Cone5ag0387 492 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0387 492 Coils Coil 472 492 - -
Cone5ag0387 492 CDD STKc_PDK1 42 311 IPR039046 GO:0004674(InterPro)
Cone5ag0387 492 FunFam 3-phosphoinositide-dependent protein kinase 2-like 128 326 - -
Cone5ag0387 492 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 31 351 - GO:0004691(PANTHER)|GO:0005952(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Cone5ag0387 492 SMART serkin_6 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0387 492 MobiDBLite consensus disorder prediction 325 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0387 Cone-Chr5:1653954 Cone5ag1195 Cone-Chr5:5398973 3.82E-51 dispersed
Cone1ag1396 Cone-Chr1:56734111 Cone5ag0387 Cone-Chr5:1653954 0 wgd
Cone11ag1025 Cone-Chr11:8118512 Cone5ag0387 Cone-Chr5:1653954 3.36E-254 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82824 PF13410 GST_C_2 6.00E-07 CL0497 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0387 K06276 - csv:101212874 802.357