Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0453 ATGGAGCAGAGACAAATGAAGTTGATTTATCTGCAATTTGTAACTTTTCATCTTCTAATTGCTTTTCTCATACTCACCGCTCAAGGCGCTTCCTATACAATATCTAACGAAACAGCCGGCACCCCCCCTGTTGGTTCCGAAAGTAAAGAACCAAAAGCATGCCCAGCTGATTGGTTAACAATGCCGAACAAGACAAAGTGCTTGGGTTATATCAGAAGCCCTCTATCATGGAATGATTCAGAGATTTACTGTAAAGAACACTATGGTGGACATTTAGCGGCCTTGACATCTGAACAAGAGCTAAGTTTTGCAAGAAATATGTGTAGTGAGCATGTAAGCGGGTGCTGGATTGGAGGTAGAGGCATTGGCTCCAATTACAGTTTTGTTTGGGAGTGGTCGGATAACACCTCAGTTTGGAATGAATCTACTTTTCTCGGACCCGCTTTCAAATCCAACTGCACAAGTTTGTCTTGCCAGCTGAATAAATTAGTTGAGCTATGTGCATCAATTGTCAATGAAACGACATTTCTCAACAATGGGAGCTGCTCAGTTTCTCGCCCTTTTATATGCATGCTCCCCTTAGATAGTAAATGTTCTCATATGCACTGCCACAGAGACTACCTTATCGTACTTTTCTCCATAAGTGGCTTGATACTTGTCACAGCATTAGCTGTAGTTATATGGCTACTTGTATACAAGAGGAGTAAGAAGCGTAGAAGATCTAGAAAACTATCAAACTCAGTAGATACTGCATTGGCATCATGGAGAGTCTTCACCAAAGAGGAACTTAGATCAATCACAAAGAACTTCAGTGAGGGAAATCGTCTACCCGGAGACTCGAAGGCAGGTGGGACCTACACCGGTCTTTTACCGGACAGTTCGAGAGTGGTAGTTAAAAGGTTGAAAAGGTCTACTTATCAGAGGAAAAAGGAGTTCTATTCTGAGATCGGAAGGGTTGCAAAGCTTCACCATCCGAATCTTGTTGCTGTGAAAGGTTGCTGCTATGATCATGGGGACCGCTACATTGTTTATGATTTCATCGTTAATGGTCCATTAGATAGATGGTTACACCACATTACGTGGGGGGGTAGGAGCTTAGATTGGGCCATGAGAATGAAAATTTCCATTACTCTTGCTCAAGGAATTGCGTTTTTACATGACAAGGTCAAGCCGCATGTGGTTCATCGTGATATCCGTGCCAATAATGTACTCATCGACGAGGAATTTGGTGCCCACTTGATGGGGGTCGGTCTCTCAAAATTCATACCATATGATGTAATGCATGAGAGGACGATGATGGCTGGTGGAACCTATGGGTACCTTGCTCCGGAATTTGTATACAGAAATGAGCTGACAACAAAGAGTGATGTATACAGTTTTGGAGTGCTTCTTCTTGAAATAGTGAGTGGTCGGAGGCCGGCTCAAGCAGTTGATTCCATGGGTTGGCAGAGTATATTTGAATGGGCCACGCCCCTAGTTCAGGCTCATAGATACCCCGAGCTATTGGACCCACATATAACTTCCACTTCTTCATCTGATATTCCGGAGGCTGGAGATATTCAGAAGGTGGTTGATCTTGTATATGCATGCACTCAACATGTCCCATCTATGCGTCCGAGAATGTCTCATGTTGTTCATCAGCTACAACAGTTGGCATATCCGCCTGCTGTTATGAAGTAA 1680 43.51 MEQRQMKLIYLQFVTFHLLIAFLILTAQGASYTISNETAGTPPVGSESKEPKACPADWLTMPNKTKCLGYIRSPLSWNDSEIYCKEHYGGHLAALTSEQELSFARNMCSEHVSGCWIGGRGIGSNYSFVWEWSDNTSVWNESTFLGPAFKSNCTSLSCQLNKLVELCASIVNETTFLNNGSCSVSRPFICMLPLDSKCSHMHCHRDYLIVLFSISGLILVTALAVVIWLLVYKRSKKRRRSRKLSNSVDTALASWRVFTKEELRSITKNFSEGNRLPGDSKAGGTYTGLLPDSSRVVVKRLKRSTYQRKKEFYSEIGRVAKLHHPNLVAVKGCCYDHGDRYIVYDFIVNGPLDRWLHHITWGGRSLDWAMRMKISITLAQGIAFLHDKVKPHVVHRDIRANNVLIDEEFGAHLMGVGLSKFIPYDVMHERTMMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSMGWQSIFEWATPLVQAHRYPELLDPHITSTSSSDIPEAGDIQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAYPPAVMK 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1917985 1920833 + Conep05aG0047100.1 Cone5ag0453 437471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0453 559 Gene3D Phosphorylase Kinase; domain 1 245 346 - -
Cone5ag0453 559 SUPERFAMILY C-type lectin-like 41 194 IPR016187 -
Cone5ag0453 559 FunFam C-type lectin receptor-like tyrosine-protein kinase 249 346 - -
Cone5ag0453 559 ProSitePatterns Tyrosine protein kinases specific active-site signature. 393 405 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0453 559 SMART tyrkin_6 276 548 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cone5ag0453 559 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 347 559 - -
Cone5ag0453 559 Gene3D Transferase(Phosphotransferase) domain 1 347 554 - -
Cone5ag0453 559 ProSiteProfiles Protein kinase domain profile. 271 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0453 559 PANTHER OS01G0750732 PROTEIN 135 551 IPR050885 -
Cone5ag0453 559 Pfam Protein tyrosine and serine/threonine kinase 292 548 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0453 559 SMART CLECT_2 54 191 IPR001304 -
Cone5ag0453 559 SUPERFAMILY Protein kinase-like (PK-like) 251 549 IPR011009 -
Cone5ag0453 559 Gene3D - 41 194 IPR016186 -
Cone5ag0453 559 Pfam Lectin C-type domain 74 191 IPR001304 -
Cone5ag0453 559 ProSiteProfiles C-type lectin domain profile. 63 191 IPR001304 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0453 Cone-Chr5:1917985 Cone16ag0596 Cone-Chr16:7751145 2.89E-63 dispersed
Cone1ag1464 Cone-Chr1:56998299 Cone5ag0453 Cone-Chr5:1917985 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82828 PF02374 ArsA_ATPase 1.20E-72 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0453 - - - 0.0