Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0474 ATGGCAGGGATGTTTCATGAGGACGGATCATCATCTGTAACTTCATCACCCTTAAACTTCTTTCCCTGGTCCTTATCCCCCAGCTTAGGATCACCATTTCCATTTTTCCGAGACCTCAATTTTGAACAAAGAGGTTTAGTCCTCATCAACCTCCTCAAAGCCTGTGCTTTCCAAGTCGCAACTGGAAATATCGATAATGCCAATATCGCCCTCGACCAAATCTCCCACCTTGCCTCTCCAGATGGAGACACCATGCAACGAATTGCCGCTTATTTCACAGAAGCACTTGCTGATCGAGTCCTTAAACTCTGGCCCGGTCTGCATAAATCCCTTAATTCTACCAAAATACCTTCTGTCTCGGAAGAGATTCTAGTCCAAAGATTCTTCTTCGATCTCTGCCCATTCTTAAAGCTTGCATATGTGCTCACAAACCAGGCTATTGTAGAAGCAATGGAAGGCGAAAAGCATATCCACATCATTGATCTTAACTCGTCTGAGCCTGCTCAATGGATCGATATTCTCCAGACGCTGAAAGAGCGGCAAGAGGGCCCGCCTCATTTGAGAATTACAGGGATTCACCAGCAGAAGGAGGTTCTAGAGCAAATGGCTCTTCGTTTGACCGAAGAAGCCGAGAAATGGGCGATTCCTTTTCAGTTCACTCCCATTGTTAGCAAATTAGAAGACCTTGACCTTGAAAGCTTACGAATCAAAACGGGTGAAGCTCTTGCTGTGAGCTCAGTACTTGAACTTCATTCCCTTTTAGCTGTTGATGATGATCGGAGAATGAACTCCCCTTCAACGGCTAAGAACTTGCAGAAAATGATGCATATGAAGTTGAGAACTTTAGGAGAATGGCTCGAGAAAGATTCGATGCAAGTTAGCCCGGGACCTGATTTGGGTTCATCCCCATTGTCATCATTTAACCCTTGTCCAAAAATGGAAACTTTTCTAAACACACTTTGTGGGTTATCACCAAATGTGATGGTAATAACCGAGCAAGAATCGAACCTTACCGGGTTTAATTTAACAGAAAGAGTAGAAGAGGCGTTGAACTTCTACGCTGCATTGTTTGATTGCTTGGAGTCTACGGTTCCGAGATCTTCTATTGAGAGGCAGAAAGTGGAGAAAATGCTTTTTGGGAAGGAGATTAAAAATATAATAGCATGTGAAGGAGTGGAGAGGAAAGAGAGGCACGAGAAGCTGGAGAAGTGGATATTGAGGCTTGAATTGGCTGGTTTTGGGAGAGTGCCTTTTAGCTACCATGGAATGATGCTAGCAAGTGGGTTGTTACAAAGCTATGGTTATGATGGGTATAAGATCAAAGATGAGAATGGTTGTTTGTTTATTTGCTGGCAAGATACACCGCTTTTTTCAGTTTCCGCTTGGAGGTTCCGTAGGTTTTGCCGTGATTACTGA 1416 43.79 MAGMFHEDGSSSVTSSPLNFFPWSLSPSLGSPFPFFRDLNFEQRGLVLINLLKACAFQVATGNIDNANIALDQISHLASPDGDTMQRIAAYFTEALADRVLKLWPGLHKSLNSTKIPSVSEEILVQRFFFDLCPFLKLAYVLTNQAIVEAMEGEKHIHIIDLNSSEPAQWIDILQTLKERQEGPPHLRITGIHQQKEVLEQMALRLTEEAEKWAIPFQFTPIVSKLEDLDLESLRIKTGEALAVSSVLELHSLLAVDDDRRMNSPSTAKNLQKMMHMKLRTLGEWLEKDSMQVSPGPDLGSSPLSSFNPCPKMETFLNTLCGLSPNVMVITEQESNLTGFNLTERVEEALNFYAALFDCLESTVPRSSIERQKVEKMLFGKEIKNIIACEGVERKERHEKLEKWILRLELAGFGRVPFSYHGMMLASGLLQSYGYDGYKIKDENGCLFICWQDTPLFSVSAWRFRRFCRDY 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2001375 2003528 + Conep05aG0049200.1 Cone5ag0474 437492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0474 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 462 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone5ag0474 471 ProSiteProfiles GRAS family profile. 39 463 IPR005202 -
Cone5ag0474 471 Pfam GRAS domain family 49 463 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0079 Cone-Chr18:421427 Cone5ag0474 Cone-Chr5:2001375 6.47E-188 dispersed
Cone5ag0474 Cone-Chr5:2001375 Cone9ag0417 Cone-Chr9:1924848 1.03E-59 dispersed
Cone1ag1484 Cone-Chr1:57078917 Cone5ag0474 Cone-Chr5:2001375 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46125 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0474 - - - 0.0