Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0480 ATGGCATCTGGAAATCCTTACTTTAACGACATGCGGAGTGAACCAGAGGTGATCGATCCTCCTCAAATCGAAGACATTGTGGATGTGGGTGAAAGCGTGAATGATTCTTCTCTGGGTGTACTAAAATCGAATGTAATAGTTTCCAGCAGTGTTCGTGAGCTATTGGAATGCCCTGTCTGCTTGAATGCTATGTACCCTCCTATTCATCAGTGTTCAAATGGTCACACTTTGTGCTCTGATTGCAAGCCTAGGGTGCACAACCGGTGCCCCACTTGCAGGCACGAGCTAGGCAATATCAGATGTCTTGCATTGGAGAAGGTGGCTGCATCTCTAGATCTTCCTTGTAAATATCATACTTTTGGTTGCCTTGGGATATACCCCTACTACAGCAAGCTGAAACATGAATCTCAGTGTGCCTATAGACCTTATAACTGCCCCTATGCCGGATCAGAATGCACAGTCATTGGTGATATACCATATTTGGTTGCCCACCTCAAAGATGATCACAAAGTGGACATGCACGATGGGAGCACTTTCAACCATCGCTATGTCAAATCTCATCCACAAGAGGTTGAAAATGCCACATGGATGCTAACGGTCTTCAGCTGCTTCGGTCAGTATTTTTGCCTGCACTTTGAAGCATTTCAACTGGGAATGGCTCCTGTCTACATTGCTTTCCTGCGTTTTATGGGTGATGATACTGAGGCAAAGAACTACAGCTACAGTCTAGAGGTGGGTGGAAATGGGAGGAAGTTGATTTGGCAAGGAGTTCCAAGGAGTATAAGGGACAGTCACCGGAAAGTACGGGACAGTTTTGATGGTCTGATAATTCAATGCAACATGGCTCTCTTCTTCTCAGGCGGGGATAGGAAGGAGCTAAAGCTTAGAGTGACTGGCAGGATTTGGAAAGAACAGTAA 918 45.64 MASGNPYFNDMRSEPEVIDPPQIEDIVDVGESVNDSSLGVLKSNVIVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSDCKPRVHNRCPTCRHELGNIRCLALEKVAASLDLPCKYHTFGCLGIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPYLVAHLKDDHKVDMHDGSTFNHRYVKSHPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDTEAKNYSYSLEVGGNGRKLIWQGVPRSIRDSHRKVRDSFDGLIIQCNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2021704 2023951 + Conep05aG0049800.1 Cone5ag0480 437498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0480 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 44 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone5ag0480 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Cone5ag0480 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Cone5ag0480 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Cone5ag0480 305 Pfam Sina, zinc finger 106 181 - -
Cone5ag0480 305 CDD RING-HC_SIAHs 55 93 - -
Cone5ag0480 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Cone5ag0480 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Cone5ag0480 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515(InterPro)
Cone5ag0480 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 109 IPR013083 -
Cone5ag0480 305 Pfam Sina, TRAF-like domain 201 298 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone5ag0480 305 SUPERFAMILY RING/U-box 56 98 - -
Cone5ag0480 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
Cone5ag0480 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
Cone5ag0480 305 CDD Sina 171 299 - -
Cone5ag0480 305 SUPERFAMILY TRAF domain-like 110 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0491 Cone-Chr11:2504830 Cone5ag0480 Cone-Chr5:2021704 1.36E-162 dispersed
Cone14ag0012 Cone-Chr14:90430 Cone5ag0480 Cone-Chr5:2021704 3.93E-171 dispersed
Cone15ag0013 Cone-Chr15:114500 Cone5ag0480 Cone-Chr5:2021704 4.59E-171 dispersed
Cone18ag1014 Cone-Chr18:7508112 Cone5ag0480 Cone-Chr5:2021704 2.60E-167 dispersed
Cone1ag0982 Cone-Chr1:54923415 Cone5ag0480 Cone-Chr5:2021704 2.03E-172 dispersed
Cone5ag0480 Cone-Chr5:2021704 Cone5ag0687 Cone-Chr5:2947117 4.57E-173 dispersed
Cone5ag0998 Cone-Chr5:4312321 Cone5ag0480 Cone-Chr5:2021704 1.71E-191 transposed
Cone1ag1491 Cone-Chr1:57102647 Cone5ag0480 Cone-Chr5:2021704 4.49E-225 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0480 K04506 - rcu:8270897 598.971