Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0481 ATGTCAACAATGAACCAAACCTCTGATCTTAACCATGTTTCTGATTCAGGGGCGATTTGTCTATATGATCTCTTGTATTCGGATTCAAACTCACCGAGGTGTTACTGGGAAACATCTCAAAGGACATATACCGGTATGCAAAAGAGGCTAGAGGACCTGTTGAGTCAATCAGGCAATGAGCTCTGTGCAGATTGTGGGTCACCAGATCCCAAATGGGTGTCTCTTAATCTGGGGGCATTGATCTGCATCAAATGCTCTGGAGTACACAGAAGCCTTGGTGTTCATATCTCTAAAGTCCTGTCTGTAAATCTAGATGAATGGACAGATGAACAAATAGATACCGTGATGAGTATTGGCGGAAATTCGAATGTAAATAAGAAGTATGAAGCTTGCATCCCAGGAGACATCATGAAACCAAAATCAGATTCCTCAACAAAGGACCGCAAGGATTTTATAAGAAGAAAATATGATCTGCAAGAGTTCTTAAGCTCAGATGATCAATGTTCTTGCCCTTATCCACCACTTCACAAAAGGACTTCATACAGCTCCACAAAACCTTCAAGCAAGCAAAGCGGCCAGGATAAGAAAAAACACGACAAAAATGGAAGCAGACATCTTATCGGGAATGCATTTCGTCAGAGCCGGGGAAGAAAAGATCCCAACCATTGTTCCAAGAGGAGTAACTCGTTGGCGGGTATGGTAGAATTTGTTGGTTTGATAAAGGTCAATGTGGTCAAGGGTACAGACCTAGCTATCCGGGATGTGATGACCAGCGATCCTTACGTAATTCTTGCATTGGGTAACCAGTCTGTGAAAACGCGAGTAATAAAGAATAGTCTTAATCCAATATGGAACGAGAGCTTAATGTTATCGATCCCAGACCAGATTCCTCCTCTAAAAGTGTTTGTATATGACAAGGATACATTCAAAACGGACGATTTTATGGGAGATGCCGAGATTGACATTCTGCCACTGCTGAATGCAGCAAAAGCATACGAAAGCAGCACGACGGATTCAATGCTGGTAGGGAAGTGGATAGCGAATGACGAAAACGCCCTCATAGAAGATGGAATCATAAACCTTGTAGATGGGAAGGTCAAGCAAACAGTGTCTCTAAGGTTGCAGAATGTAGAAAGAGGTGTTCTAGATATAGAACTAGAATGTGTCCCTCTCACTCAATAG 1182 42.39 MSTMNQTSDLNHVSDSGAICLYDLLYSDSNSPRCYWETSQRTYTGMQKRLEDLLSQSGNELCADCGSPDPKWVSLNLGALICIKCSGVHRSLGVHISKVLSVNLDEWTDEQIDTVMSIGGNSNVNKKYEACIPGDIMKPKSDSSTKDRKDFIRRKYDLQEFLSSDDQCSCPYPPLHKRTSYSSTKPSSKQSGQDKKKHDKNGSRHLIGNAFRQSRGRKDPNHCSKRSNSLAGMVEFVGLIKVNVVKGTDLAIRDVMTSDPYVILALGNQSVKTRVIKNSLNPIWNESLMLSIPDQIPPLKVFVYDKDTFKTDDFMGDAEIDILPLLNAAKAYESSTTDSMLVGKWIANDENALIEDGIINLVDGKVKQTVSLRLQNVERGVLDIELECVPLTQ 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2024642 2027551 + Conep05aG0049900.1 Cone5ag0481 437499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0481 393 Gene3D Arf GTPase activating protein 30 169 IPR038508 -
Cone5ag0481 393 Pfam C2 domain 239 325 IPR000008 -
Cone5ag0481 393 MobiDBLite consensus disorder prediction 190 205 - -
Cone5ag0481 393 Pfam Putative GTPase activating protein for Arf 48 163 IPR001164 GO:0005096(InterPro)
Cone5ag0481 393 CDD ArfGap 50 156 - -
Cone5ag0481 393 CDD C2_ArfGAP 237 380 - -
Cone5ag0481 393 SUPERFAMILY ArfGap/RecO-like zinc finger 47 162 IPR037278 -
Cone5ag0481 393 SMART arf_gap_3 47 166 IPR001164 GO:0005096(InterPro)
Cone5ag0481 393 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 236 393 - -
Cone5ag0481 393 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 235 329 IPR035892 -
Cone5ag0481 393 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 40 393 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cone5ag0481 393 MobiDBLite consensus disorder prediction 174 225 - -
Cone5ag0481 393 Gene3D C2 domain 237 388 IPR035892 -
Cone5ag0481 393 ProSiteProfiles C2 domain profile. 214 335 IPR000008 -
Cone5ag0481 393 FunFam stromal membrane-associated protein 1 isoform X1 34 167 - -
Cone5ag0481 393 PRINTS HIV Rev interacting protein signature 99 120 IPR001164 GO:0005096(InterPro)
Cone5ag0481 393 PRINTS HIV Rev interacting protein signature 78 95 IPR001164 GO:0005096(InterPro)
Cone5ag0481 393 PRINTS HIV Rev interacting protein signature 59 78 IPR001164 GO:0005096(InterPro)
Cone5ag0481 393 SMART C2_3c 239 334 IPR000008 -
Cone5ag0481 393 ProSiteProfiles ARF GTPase-activating proteins domain profile. 47 169 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0750 Cone-Chr13:7118508 Cone5ag0481 Cone-Chr5:2024642 5.01E-34 dispersed
Cone1ag0302 Cone-Chr1:2253274 Cone5ag0481 Cone-Chr5:2024642 3.98E-110 dispersed
Cone5ag0481 Cone-Chr5:2024642 Cone5ag1543 Cone-Chr5:10615499 4.36E-104 dispersed
Cone5ag1000 Cone-Chr5:4320413 Cone5ag0481 Cone-Chr5:2024642 6.06E-154 transposed
Cone1ag1492 Cone-Chr1:57105587 Cone5ag0481 Cone-Chr5:2024642 1.81E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0481 K12486 - gmx:100799376 504.597