Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0500 ATGGCCAGAATCGCAGAAGAGCTTATGAATGCAGAGGATGTTAAAGAAGGAGAAGAAAGCGAAGTCGATGAGGGGCTCGAAGGCTGGGATGACTGGAACTCAGACGAAGAAGATGGTGGGAGGTCGGACTCTGATTTCCAGTGCTTGTTCTGTGATTCCAAGTTTAGTGCCTGCGATGCACTTTTCGATCACTGCACGTCACTCCACCACTTTGATTTTCCTGGTATTCGGAGGGCACTTTGTTTGGATTTCTACAGCTTGTTCAAGCTCATCAACTATACCCGCGCTCAGGTAGCTCAAAACAGATGCTGGAGTTGTGGGTTGCCCTGTCAGTCCAATCAGGATCTACAGAACCATTTACATAAAGTAGTCAAATTTGAAGACGTTAAGCTTCTTTGGGATGATGATAAGTATTTGAAACCTTTTATGGAAAATGATTCGCTCTTGTTCAGTTTTGCTGAAGATGACGAAGGTGAAGATGACTGTATGTCATCAGTTGACAAAGAGCAAGTTTTGAGTGATTTGGAGATTGCTGGAGGGATGTGCATTGATGGCAAGACTATTGAGAATGGTGCTGCCTCTACTTCTTTTGGCTGTTTGAATGCTGCTGGCCAGTTGGAGCAGGAGAGGGGGAATGATTTGGAATCTCAAGAGGACTATCGATTGTCCAATGGAAAACCAGCGGAGGGTCATTTGAAGGTTTCTACTAGAGATATCAAGAATGTTAATGAAAGCTATTTTGGGTCATATAGTTCGTTTGGAATTCACAGGGAGATGTTGAGCGACAAGGTAAGAATGGAAGCCTATAGGCAGGCTATCTTGCAAAATCCTTCCCTTTTGAAAAATGCAGTTGTGGTAGATGTGGGTTGTGGGACTGGCATACTAAGTATCTTTGCTGCTAAAGCAGGGGCTTCAAGGGTCATTGCAGTTGAAGCTAGTGAAAGGATGGCTGCAGTGGCTTCTCAGATTGCAAAAAACAATGGCCTTTGGCGGAGTAAGAACCAGAATGAAAGCGTTAGACAGTCAAATGGAGTTATAGAAGTGGTTCAAAGTATGGTTGAAGAACTTGACAAGTCCATAGATATTCCTCCACATAGTGTGGATGTACTATTAAGTGAATGGATGGGCTACTGCTTGCTCTACGAGTCAATGCTCAGCTCAGTTCTCTTTGCACGAGATCAATGGTTGAAGCCAGGAGGTGCAATCCTCCCAGACACAGCTACAATTTTTGTTGCAGGGTTTGGAGTAGGCAGTACAAGTCTTCCCTTTTGGGAAAATGTGTATGGTTTCAGCATGTCACACGTAGGCCAGGAGCTTGTCAAAGAAGCTGCTCAACTTCCCATTGTTGACGTTGTAGACGATCATGATATAGTGACCAGCACTGCAATTCTCCACACCTTTGATCTGGCAACAATGAAAGCCGATGAAGTAGATTTCACTGCAAGCGCAGAGTTAGAACCTAACCTAGGTAGTCCAGCAAGCAACTCATCCCGGTGTTATGGAGTTGTGTTGTGGTTTGAAACAGGCTTCACCAGCAGGTTCTGCAGAGAATCACCAGCTGTTTTGTCTACATCCCCATATGCTCCGAAAACACATTGGTCACAGACAATATTGACCTTCCAAGAGCCAGTTGCAATGGAAACAAGAAGATCCGAGAGCGGTGGGTCAGGCCAAGTCGGAAGTGACTCAAGTCCTGCCATCAAAATCCTCTTGCGTATCAGCATTGCTCGTGCTGTGGAACATCGCAGCATCGACATTTCTTTGGAAACTGCTCTTCTTGCACACGATGGTAGGAAATGTACTCGTCCTGTCCAACTTTTTACTCTACGCTAG 1833 45.06 MARIAEELMNAEDVKEGEESEVDEGLEGWDDWNSDEEDGGRSDSDFQCLFCDSKFSACDALFDHCTSLHHFDFPGIRRALCLDFYSLFKLINYTRAQVAQNRCWSCGLPCQSNQDLQNHLHKVVKFEDVKLLWDDDKYLKPFMENDSLLFSFAEDDEGEDDCMSSVDKEQVLSDLEIAGGMCIDGKTIENGAASTSFGCLNAAGQLEQERGNDLESQEDYRLSNGKPAEGHLKVSTRDIKNVNESYFGSYSSFGIHREMLSDKVRMEAYRQAILQNPSLLKNAVVVDVGCGTGILSIFAAKAGASRVIAVEASERMAAVASQIAKNNGLWRSKNQNESVRQSNGVIEVVQSMVEELDKSIDIPPHSVDVLLSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATIFVAGFGVGSTSLPFWENVYGFSMSHVGQELVKEAAQLPIVDVVDDHDIVTSTAILHTFDLATMKADEVDFTASAELEPNLGSPASNSSRCYGVVLWFETGFTSRFCRESPAVLSTSPYAPKTHWSQTILTFQEPVAMETRRSESGGSGQVGSDSSPAIKILLRISIARAVEHRSIDISLETALLAHDGRKCTRPVQLFTLR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2107923 2110615 + Conep05aG0051800.1 Cone5ag0500 437518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0500 610 Pfam C2H2 type zinc-finger (2 copies) 47 122 IPR041661 -
Cone5ag0500 610 MobiDBLite consensus disorder prediction 1 38 - -
Cone5ag0500 610 FunFam Protein arginine N-methyltransferase 6 239 404 - -
Cone5ag0500 610 Pfam Arginine methyltransferase oligomerization subdomain 405 549 - -
Cone5ag0500 610 Gene3D - 406 598 - -
Cone5ag0500 610 Pfam Methyltransferase domain 285 400 IPR041698 -
Cone5ag0500 610 SUPERFAMILY beta-beta-alpha zinc fingers 27 161 IPR036236 -
Cone5ag0500 610 ProSitePatterns Zinc finger C2H2 type domain signature. 48 70 IPR013087 -
Cone5ag0500 610 Gene3D Vaccinia Virus protein VP39 234 404 IPR029063 -
Cone5ag0500 610 CDD AdoMet_MTases 285 403 - -
Cone5ag0500 610 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 243 570 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Cone5ag0500 610 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 249 547 IPR029063 -
Cone5ag0500 610 MobiDBLite consensus disorder prediction 12 38 - -
Cone5ag0500 610 Coils Coil 1 21 - -
Cone5ag0500 610 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 216 591 IPR025799 GO:0005634(PANTHER)|GO:0016274(InterPro)|GO:0018216(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0500 Cone-Chr5:2107923 Cone7ag0728 Cone-Chr7:4410909 3.71E-60 dispersed
Cone1ag1508 Cone-Chr1:57189506 Cone5ag0500 Cone-Chr5:2107923 2.73E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0500 K11436 - csv:101215999 758.444