Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0502 ATGGGCTCACCTGCTGTGGAAAAGATGGAAGACACTAAGCTGTCTGTCACAACAACCAACAATTCTCTGACAGGCGTTCACCAGGAGAGTTCTGAAACTCGATTTAGAGATTTCTGCAAGAATGAGTTATCATTGGATGAGGACATGCAAATCCAAGCTTTGAAGCTCTTTAAGGAAACTAACAATCTCCTGTTCACTAATATACCAGCCATTGGAAGTGGAGTGCCTGAAGAATCAGAACGATTTTGGTATGCCTTTGTTTTATACTCTGTGAAGAGGTTGAGTTACAAGAATGATGATCATACACAAGAGGGATCTGGTTTATGCCAGATCTTGAGAGCTGCAAAGCTTAACATTGTAGATTTTTTCAAAGAGCTACCTCAGTTTGTTGTTAAGGCTGGTCCAGTTTTAAGTAATCTTTATGGGACTGATTGGGAAGTCAGAATCGAGGCAAAAGAGTTGCAGGCTAATTTTGAACACCTGAGCCTCTTAAGCAAGTACTACAAACGTGTATACTTGGAATTCTTCTCAACAAGTGATGCTAATGCCTATAAGGAGTCCAGTGTTGCTAGCACCACGGGTTATGTGTCAGACTACCATCGTTTTGGATGGTTACTATTTTTGGCCCTTCGTGTACATGCATTCAGCCGGTTCAAGGACCTAGTAACTTGCACCAATGGTTTGGTCTCTATTTTGGCTATTTTAATCATTCATGTTCCCATTCACTTCAGAAACTTTGACATTCTTGATTCTCAACGCTTTGTTAAGAAAGGCAACAAAGGAGTGGATCTACTTGGATCACTTTGCAACATAGATGACGCATCAGAGGAGGAAGTGAAGAAAACAATGGAAAAGGCAAATAATTTGATACAAGATATTTTGAAGAAGAAGCCATGTTCGGTTTCGGAGTGTAGTAATAATAATTTAGAGAATATAGACACAGATGGTTTGACATATTTTAAAGATCTCATGGAGGAATCATCTTTGTCATCCAGTTTAGACATTCTAGAAAAGGACTATGATGATGCAGTTCGTAGTAAGGTTGATCTGGACGAGAGGGTATTCATTAATGGAGAGGACAGCCTACTTGGGCCCAGTAGCTTGTCGGCGGGTGCGGTTAATATAAGTGGTGTGAAGAGAGAGTTTGACTTGATTGCATCGCCTGCAAGGACAATCACAAGTCCACTTTCTCCTCTTAGGTCTCCTGCTTCTCATGCCAATGGAACTCTTGGTGGTGCTAATGCAAAGATAGCAGCTACACCAGTGAGCACGGCAATGACAACAGCGAAGTGGCTTCGGACTATTATTTCTCCACTTTCAGAAAAACCTTCAGCAGAGCTGGAAAGCTTTCTAGCATCATGTGATCGGGATGTTACTAATGATGTCGTTCGTAGGGCTCACATAATACTAGGGGCGATATTTCCAAGTAGTGCTCTGGGAGAGCGTTGTATAGCTGGAAGCCTTCAGAGCTCAAATCTCATGGACAACATCTGGGCAGAACAGCGACGACTGGAAGCACTAAAATTATATCATAGGGTTTTGGAAGCAATGTGTAGAGCGGAAGCCCAAATTTTGCATGCAACTAATTTGACCTCTCTACTTACTAATGAGAGATTCCATAGATGTATGCTTGCTTGCTCTGCTGAGCTAGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCGGTTTTAGAGAGAACGGGGATTACAGCTTTTGATCTTAGTAAGGTGATAGAGAGTTTCATTAGACATGAGGACTCTCTCCCAAGAGAATTGAGACGACACCTGAATTCCTTAGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGATAGTTGCAAGACCTATTCTTGCAACAGAAATAAACCGTATCGGTTTATTGGCAGAACCCATGCCTTCTCTAGATACAATTGCTACACACACAAATTTTTCTGGCACTGGGATGCCCTCATTGCCTAATTCCCAAAAGCATGAGAGTTCACTAGGTCAGAATGGGGATATCAGATCTCCAAAAAGATTGTGCATGGATAATCGAAGTGTATTAGTGGAGCGGAATTCCTTTACTTCTCCAGTGAAGGATCGACTTCTAGCCTTCAGCAACCTTAAAGCCAAACTACCTCCGCCTCCTCTGCAGTCTGCATTTGCAAGTCCAACCCGGCCTAATCCTGGAGGAGGAGGCGAAACATGTGCAGAAACTGGAATAAATATATTCTTTAACAAGATTACCAAGTTGGCTGCTGTGAGAGTCAATGGCATGGTTGAAAGGCTGCAACTATCTCAGCAGATCAGGGAGAATGTCTACTGCCTTTTTCAACAGGTTCTAAGTCAGAAGACATTTCTCTTCTTCAATCGTCATATAGACCAGATCATCCTTTGCTGTTTCTATGGAATTGCCAAGATATCTCAACTGAACCTGACTTTTAAGGAAATCATTTACAACTACAGGAAGCAACCACAATGTAAACCACAAGTTTTCCGCAGTGTGTTTGTTGATTGGCCAACAGCTCACCGTAATGGGAAATCAGGACGCGATCACGTTGATATAATCTCATTTTATAATGAAATATTCATACCTACTGTAAAGAAGCTGCTGGTTGAACTTGGCCCTACCGGATCAGCTACAAAAAATAATAGAGTTCCTGAAGCAAACACCAATCACCATGCACAATGTCCTAGCTCCCCCAAGGTGTCTCCTTTCCCAAATCTTCCTGACATGTCCCCCAAGAAAGTATCTGCTGCCCACAATGTCTATGTCTCTCCATTAAGGTCTTCGAAGATGGATGCCCTAATTTCACATAGTTCAAAAAGCTACTATGCTTGTGTTGGAGAGAGTACTCATGCATATCAAAGCCCGTCAAAAGATCTGACGGCCATAAATAACCGCTTGAACGGTACACGGAAGGTGCGGGGCGCACTTAATTTTGACGATGCTGATGTTGATTTGGTTAGTGATTCAATGGTGGCCAACAGTCTCTACCTTCAAAACGGGAGCTGTGCAACCTCATCCTGTGCACCAGTCAAAACTGAACAACCTGACTCCTAA 3075 42.24 MGSPAVEKMEDTKLSVTTTNNSLTGVHQESSETRFRDFCKNELSLDEDMQIQALKLFKETNNLLFTNIPAIGSGVPEESERFWYAFVLYSVKRLSYKNDDHTQEGSGLCQILRAAKLNIVDFFKELPQFVVKAGPVLSNLYGTDWEVRIEAKELQANFEHLSLLSKYYKRVYLEFFSTSDANAYKESSVASTTGYVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHVPIHFRNFDILDSQRFVKKGNKGVDLLGSLCNIDDASEEEVKKTMEKANNLIQDILKKKPCSVSECSNNNLENIDTDGLTYFKDLMEESSLSSSLDILEKDYDDAVRSKVDLDERVFINGEDSLLGPSSLSAGAVNISGVKREFDLIASPARTITSPLSPLRSPASHANGTLGGANAKIAATPVSTAMTTAKWLRTIISPLSEKPSAELESFLASCDRDVTNDVVRRAHIILGAIFPSSALGERCIAGSLQSSNLMDNIWAEQRRLEALKLYHRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARPILATEINRIGLLAEPMPSLDTIATHTNFSGTGMPSLPNSQKHESSLGQNGDIRSPKRLCMDNRSVLVERNSFTSPVKDRLLAFSNLKAKLPPPPLQSAFASPTRPNPGGGGETCAETGINIFFNKITKLAAVRVNGMVERLQLSQQIRENVYCLFQQVLSQKTFLFFNRHIDQIILCCFYGIAKISQLNLTFKEIIYNYRKQPQCKPQVFRSVFVDWPTAHRNGKSGRDHVDIISFYNEIFIPTVKKLLVELGPTGSATKNNRVPEANTNHHAQCPSSPKVSPFPNLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGALNFDDADVDLVSDSMVANSLYLQNGSCATSSCAPVKTEQPDS 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2114767 2121160 - Conep05aG0052000.1 Cone5ag0502 437520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0502 1024 MobiDBLite consensus disorder prediction 886 906 - -
Cone5ag0502 1024 CDD CYCLIN_AtRBR_like 745 876 - -
Cone5ag0502 1024 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 10 1021 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Cone5ag0502 1024 SMART RB_A_2 420 621 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cone5ag0502 1024 FunFam Retinoblastoma-related protein 1 695 905 - -
Cone5ag0502 1024 Gene3D - 703 913 - -
Cone5ag0502 1024 SUPERFAMILY Cyclin-like 428 623 IPR036915 -
Cone5ag0502 1024 MobiDBLite consensus disorder prediction 655 677 - -
Cone5ag0502 1024 Pfam Retinoblastoma-associated protein B domain 745 872 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Cone5ag0502 1024 Pfam Domain of unknown function (DUF3452) 104 238 IPR024599 -
Cone5ag0502 1024 Gene3D - 423 611 - -
Cone5ag0502 1024 Coils Coil 333 353 - -
Cone5ag0502 1024 MobiDBLite consensus disorder prediction 655 679 - -
Cone5ag0502 1024 SMART DUF3452_2 94 238 IPR024599 -
Cone5ag0502 1024 Pfam Retinoblastoma-associated protein A domain 420 621 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cone5ag0502 1024 FunFam Retinoblastoma-related protein 1 423 611 - -
Cone5ag0502 1024 SUPERFAMILY Cyclin-like 743 912 IPR036915 -
Cone5ag0502 1024 Coils Coil 276 296 - -
Cone5ag0502 1024 Gene3D - 199 357 - -
Cone5ag0502 1024 FunFam Retinoblastoma-related protein 1 199 357 - -
Cone5ag0502 1024 MobiDBLite consensus disorder prediction 886 909 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1510 Cone-Chr1:57195864 Cone5ag0502 Cone-Chr5:2114767 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46129 PF08149 BING4CT 6.00E-33 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0502 K04681 - csv:101219810 1592.02