Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag0514 | ATGTCAAATTCGGAAGGAGGTAACAACAACGGTGCCATAATCGACCCCCAGCGGCAGCCCCCGGGAAACGGTACCCTCACCGTGAAGAAGCCTCCCTCTAAGGACCGTCACAGCAAGGTCGACGGCCGTGGACGCCGTATCCGCATGCCCATCATATGCGCCGCACGTGTCTTCCAGCTCACTCGCGAACTTGGCCACAAGTCTGATGGCCAGACTATCGAGTGGCTCCTCCGCCAAGCCGAGCCTTCCATCATAGCTGCCACCGGTACTGGTACCACTCCTGCCAGCTTCTCCTCTGTCTCTGCCTCCATTCGCGGGGCCGGCGTATCCACCTCTCTCTCCCCCTCCTCCACTACATCTTCTCTATCCCTCTCTCGACCACAAGCTTTTCTCGGCCCCACGCCCTTCATCCTCGGTAAGCGTGTGCGATCTGACGACGATGGAGGCAGTGGAGCCAAGGACGAAACGGTCTCCGTTGCTAACGCAGTGGGTTCCATTGTGGGTCCCTCGGCCACTGGCGGTTACTGGGCCATACCCACCAGGCCGGACTTCGGCCAGGTCTGGAGCTTCGCCCCGCCGGAGATGGTGGTTCATCCGGCGACGGTGTCTCAGCAGGCGTCGCTGTTTGTTCAGCAGCAGCAGCAGCAGACAGGGGAGGCCTCAGCGGCGAGGGTGGGGAATTACCTTCCTGGACATCTGAATTTGCTTGCTTCTTTGTCGGGCGGCCCGGGCAGTTCCGGCAGGAGAGAGGATGACACTCGTTGA | 765 | 60.92 | MSNSEGGNNNGAIIDPQRQPPGNGTLTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSASIRGAGVSTSLSPSSTTSSLSLSRPQAFLGPTPFILGKRVRSDDDGGSGAKDETVSVANAVGSIVGPSATGGYWAIPTRPDFGQVWSFAPPEMVVHPATVSQQASLFVQQQQQQTGEASAARVGNYLPGHLNLLASLSGGPGSSGRREDDTR | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2163684 | 2164781 | + | Conep05aG0053200.1 | Cone5ag0514 | 437532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag0514 | 254 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 23 | 187 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cone5ag0514 | 254 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cone5ag0514 | 254 | Pfam | TCP family transcription factor | 33 | 120 | IPR017887 | - | |
Cone5ag0514 | 254 | MobiDBLite | consensus disorder prediction | 30 | 46 | - | - | |
Cone5ag0514 | 254 | ProSiteProfiles | TCP domain profile. | 33 | 87 | IPR017887 | - | |
Cone5ag0514 | 254 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone3ag0268 | Cone-Chr3:1397966 | Cone5ag0514 | Cone-Chr5:2163684 | 6.00E-30 | dispersed | |
Cone5ag0514 | Cone-Chr5:2163684 | Cone6ag0740 | Cone-Chr6:3733009 | 5.26E-26 | dispersed | |
Cone1ag1521 | Cone-Chr1:57261889 | Cone5ag0514 | Cone-Chr5:2163684 | 4.33E-147 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46130 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag0514 | K16221 | - | cit:102623358 | 320.472 |