Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0514 ATGTCAAATTCGGAAGGAGGTAACAACAACGGTGCCATAATCGACCCCCAGCGGCAGCCCCCGGGAAACGGTACCCTCACCGTGAAGAAGCCTCCCTCTAAGGACCGTCACAGCAAGGTCGACGGCCGTGGACGCCGTATCCGCATGCCCATCATATGCGCCGCACGTGTCTTCCAGCTCACTCGCGAACTTGGCCACAAGTCTGATGGCCAGACTATCGAGTGGCTCCTCCGCCAAGCCGAGCCTTCCATCATAGCTGCCACCGGTACTGGTACCACTCCTGCCAGCTTCTCCTCTGTCTCTGCCTCCATTCGCGGGGCCGGCGTATCCACCTCTCTCTCCCCCTCCTCCACTACATCTTCTCTATCCCTCTCTCGACCACAAGCTTTTCTCGGCCCCACGCCCTTCATCCTCGGTAAGCGTGTGCGATCTGACGACGATGGAGGCAGTGGAGCCAAGGACGAAACGGTCTCCGTTGCTAACGCAGTGGGTTCCATTGTGGGTCCCTCGGCCACTGGCGGTTACTGGGCCATACCCACCAGGCCGGACTTCGGCCAGGTCTGGAGCTTCGCCCCGCCGGAGATGGTGGTTCATCCGGCGACGGTGTCTCAGCAGGCGTCGCTGTTTGTTCAGCAGCAGCAGCAGCAGACAGGGGAGGCCTCAGCGGCGAGGGTGGGGAATTACCTTCCTGGACATCTGAATTTGCTTGCTTCTTTGTCGGGCGGCCCGGGCAGTTCCGGCAGGAGAGAGGATGACACTCGTTGA 765 60.92 MSNSEGGNNNGAIIDPQRQPPGNGTLTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSASIRGAGVSTSLSPSSTTSSLSLSRPQAFLGPTPFILGKRVRSDDDGGSGAKDETVSVANAVGSIVGPSATGGYWAIPTRPDFGQVWSFAPPEMVVHPATVSQQASLFVQQQQQQTGEASAARVGNYLPGHLNLLASLSGGPGSSGRREDDTR 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2163684 2164781 + Conep05aG0053200.1 Cone5ag0514 437532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0514 254 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 187 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone5ag0514 254 MobiDBLite consensus disorder prediction 1 26 - -
Cone5ag0514 254 Pfam TCP family transcription factor 33 120 IPR017887 -
Cone5ag0514 254 MobiDBLite consensus disorder prediction 30 46 - -
Cone5ag0514 254 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Cone5ag0514 254 MobiDBLite consensus disorder prediction 1 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0514 K16221 - - cit:102623358 320.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0268 Cone-Chr3:1397966 Cone5ag0514 Cone-Chr5:2163684 6.00E-30 dispersed
Cone5ag0514 Cone-Chr5:2163684 Cone6ag0740 Cone-Chr6:3733009 5.26E-26 dispersed
Cone1ag1521 Cone-Chr1:57261889 Cone5ag0514 Cone-Chr5:2163684 4.33E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0514 . . . . . Cme10g00793 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1521 . 29 250 TCP Transcription Factor Family AT5G23280 62.7 3.5e-65 245.7
Cone5ag0514 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.0e-64 241.9
Cone14ag0318 . 1 348 TCP Transcription Factor Family AT2G45680 50.8 6.6e-70 261.9
Cone15ag0348 . 71 342 TCP Transcription Factor Family AT2G45680 54.6 1.6e-63 240.7
Cone19ag0075 . 78 175 TCP Transcription Factor Family AT3G47620 88.9 6.8e-41 166.0
Cone19ag0952 . 67 154 TCP Transcription Factor Family AT3G47620 92.0 4.9e-39 159.8
Cone19ag0075 . 78 172 TCP Transcription Factor Family AT1G69690 87.4 3.6e-38 156.4
Cone2ag0034 . 75 304 TCP Transcription Factor Family AT3G27010 60.4 5.9e-62 235.3
Cone16ag1006 . 32 266 TCP Transcription Factor Family AT3G27010 60.5 7.7e-62 235.0
Cone18ag1441 . 1 291 TCP Transcription Factor Family AT3G27010 53.2 1.2e-54 211.1
Cone11ag0038 . 5 260 TCP Transcription Factor Family AT3G27010 52.3 1.1e-52 204.5
Cone5ag0514 . 1 252 TCP Transcription Factor Family AT5G08330 55.4 4.8e-64 241.9
Cone1ag1521 . 1 248 TCP Transcription Factor Family AT5G08330 55.3 3.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46130 None None None None Cone TF