Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0524 ATGGGGTGTGTTTTCAACCGTGAGGCATCCTCAAGAAATGTAGAAGCTTCTGAGGATAAGGTGGGAAAAGATACGAGAAATAAATCTAATAAGAAGGTAGAAGATGGTGTTTTGCGAAATAAGGTTGAAAAGATAGATGATAATGTGGCCGAAGAGCAAAATGGTGAATCTCAAAAAGAGGAGAAGGCTGATGAGCGCCAGCATGGGGCCCGGGGAGAGAGGCGAAAGTCAAAGACACAGCCTAGGCCTAGAAATTTGCCGAAACAATCGAGGGGGGAACAGGTGGCAGCTGGATGGCCTTCTTGGCTAACTGGAGTTTGTGGGGAGGCACTCAATGGTTGGCTTCCAAGGAAAGCGGACACTTTTGAAAAAATCGATAAGATTGGACAAGGAACATATAGTAACGTGTACAAAGCCAAAGATATGCTGACGGGAAAAATTGTTGCACTGAAGAAGGTTCGGTTCGACAATTTAGAACCCGAGAGTATAAAATTCATGGCTAGAGAGATTCTCATTCTGCGGCGATTAGATCATCCTAATGTTGTAAAGTTGGAAGGTTTGGTCACATCAAGGATGTCTTGTAGTTTATACCTTGTCTTCGAGTACATGGAGCATGATTTAGCCGGACTCGCTGCCAACCCAGATATCAAATTCACTGAACCACAGGTTAAGTGTTTTATGAAACAGCTGTTATCTGGGCTAGAACACTGTCACACTTGTAGAGTTCTTCACCGTGATATTAAAGGATCTAATCTTCTCATTGATGGTGGAGGAGTTCTTAAAATTGCTGACTTTGGACTTGCTTCTACCTTTGATCCGAACCGTAAACACCCTATGACTAGCCGTGTAGTTACCTTATGGTACCGCCCACCAGAGCTCCTTCTTGGGGCTACTGATTATGGTGTGGGTGTAGACCTTTGGAGTGCTGGATGTATTTTAGCTGAGTTATTAGCCGGCAGACCCATTATGCCTGGCCGTACTGAGGTAGAGCAACTACATAAAATTTACAAGCTTTGTGGGTCCCCCTCGGAAGAATACTGGAAAAGAGCAAAATTACCAAATGCGACCTTATATAAGCCAAGGGAGCCTTACAGAAGGCATATAAAAGAGACGTTTAAGGATTTCCCGCCATCATCACTGCCTCTTATAGAAACTCTTCTTGCAATTGATCCAGCAGAACGCAAGACAGCAACAGCCGCATTAAAAAGTGAGTTCTTCACTACAGAGCCTTATTGTTGTGAACCTTCTGACCTACCAAAATATCCTCCGAGCAAGGAGATAGATGCTAAAAGACGGGATGATGAAGTTAGGAGGCTAAGAGCAGCTAGTAAAGCACAAGGTGATGGCGTAAAGAAACCTCGAAGAGAACAAGCTGTGAAAGCTGTTCCTGCCCCAGAAGCCAATGCAGAAATACAATCCAACATTGATAGAAGACGCCTTATTACACATGCAAATGCAAAGAGCAAGAGCGAAAAATTCCCTCCACCACACCAAGATGGAGCGGTTGGGTTTCCATTAGGAGTTTCTCGTCATATAGATCCCGCTGCTGTTCCCACCGCTGTTCCATTCAGTTCGAACTCATTCAGCTATTCACATGATCCGGGCCAAGCATGGTCCGGCCCGCTGGTTGAACCGTCTAGTGCCGGCCCAACAAGAAAGTCCCGAGAACAGTCAAAACTATCCAGAAATGGTGATGCTATGTTAAAAGGAAAGAGAATTATGATGATTCATTGA 1734 44.58 MGCVFNREASSRNVEASEDKVGKDTRNKSNKKVEDGVLRNKVEKIDDNVAEEQNGESQKEEKADERQHGARGERRKSKTQPRPRNLPKQSRGEQVAAGWPSWLTGVCGEALNGWLPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESIKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPDIKFTEPQVKCFMKQLLSGLEHCHTCRVLHRDIKGSNLLIDGGGVLKIADFGLASTFDPNRKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSEEYWKRAKLPNATLYKPREPYRRHIKETFKDFPPSSLPLIETLLAIDPAERKTATAALKSEFFTTEPYCCEPSDLPKYPPSKEIDAKRRDDEVRRLRAASKAQGDGVKKPRREQAVKAVPAPEANAEIQSNIDRRRLITHANAKSKSEKFPPPHQDGAVGFPLGVSRHIDPAAVPTAVPFSSNSFSYSHDPGQAWSGPLVEPSSAGPTRKSREQSKLSRNGDAMLKGKRIMMIH 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2209239 2212945 - Conep05aG0054200.1 Cone5ag0524 437542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0524 577 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0524 577 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
Cone5ag0524 577 SMART serkin_6 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0524 577 FunFam probable serine/threonine-protein kinase At1g54610 205 446 - -
Cone5ag0524 577 MobiDBLite consensus disorder prediction 417 506 - -
Cone5ag0524 577 CDD STKc_CDK9_like 122 406 - -
Cone5ag0524 577 MobiDBLite consensus disorder prediction 421 459 - -
Cone5ag0524 577 Gene3D Transferase(Phosphotransferase) domain 1 205 445 - -
Cone5ag0524 577 MobiDBLite consensus disorder prediction 1 96 - -
Cone5ag0524 577 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Cone5ag0524 577 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0524 577 MobiDBLite consensus disorder prediction 472 494 - -
Cone5ag0524 577 MobiDBLite consensus disorder prediction 531 577 - -
Cone5ag0524 577 PANTHER CELL DIVISION PROTEIN KINASE 121 406 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone5ag0524 577 SUPERFAMILY Protein kinase-like (PK-like) 117 411 IPR011009 -
Cone5ag0524 577 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524(InterPro)
Cone5ag0524 577 MobiDBLite consensus disorder prediction 12 80 - -
Cone5ag0524 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0174 Cone-Chr4:812123 Cone5ag0524 Cone-Chr5:2209239 7.78E-289 dispersed
Cone5ag0524 Cone-Chr5:2209239 Cone7ag0178 Cone-Chr7:747060 2.61E-278 dispersed
Cone1ag1738 Cone-Chr1:58138096 Cone5ag0524 Cone-Chr5:2209239 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82830 PF00069 Pkinase 2.50E-71 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0524 K08819 - csv:101215893 890.952