Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0529 ATGAAGCACATTTTCAAGAAGCTTCATATAGGAAGCAACCACGAGCCAAATCGATCAAATGAATCTCCAGCTGCTTCTGTGATATCTCCGTCGTGTGCGCCCGATCAGCGTACATCGTCTGGTCAGACCTCCGGCAACTCTCAGGCCAGTCCTGCGTCATCGTCTCCATCTGTGGTAACCGTTCCTGCAGGTGGCAACACTGCTACGCCGGCTTCTCCGGCTTCCAATCGACCCGATTATATTTCCTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCGATCAGTGCCTCGAATTCAGACTTTCGGGATGATCCGGAGAAAGATCAGATTCGAGCTGCGACGCTGCTTAGCTTGGGGAGCAATCGGATCGATACGGTGGTCAGAGATAGAGATGAGGCTGCGGAAGCCTTGTCGAGGCAATATTGGGAATATAATCTGATAGACTACGAAGAGAAAGTGGTTGATGGATTCTATGATGTCTACGGGATATCCGCAACAACCCAAGGAAAAATGCCAAGTCTGACTGATCTTGAATCAAGCCTTGGTAGTTCTGGGTATGAAGCTGTAGTTGTTAATATAGCAATTGATCATGCTCTTGGAGAGCTTGTGCAAATTGCTCAGTGCATTGCTGATTGCCCAGGCACTGAGATTGGTGTTTTAGTACAGAGGCTTGCCGAACTTGTTACAGGAAATATGGGTGGACCTGTGAAGGATCCTAATATTATGTTAGCAAGGTGGATGGAAAGAAACACCGAGTTGAGGATGTCACTTCACACCAGCATCTTGCCTATTGGGTCTATTAATATTGGCCTCTTACGCCACCGTGCTTTGCTTTTCAAGGTGTTAGCTGACAAAATCAGGATGCCTTGTAGACTGGTAAAAGGTAGTCATTACACTGGCATTGAGGAGGATGCTGTCAACCTTATAAAACTGGAGGATGAAAGGGAATATTTGATTGATCTAATGGCAGCCCCAGGAGCTCTTATACCAACTGATATATTAACTGCAAAGGACAGCAGCTCTAAGCCATACAACCCTAAAATAAGTAAACTCCCCCCTCTCCATACCTTAAACAGCAGAATTTCTTTCTCAAAACCAACATCATCACCTGATGAAGGTAGCAGTCAAAGCTCTGTAGTGGAAAGTAGTTTTCTGCTGGATGGAAAACGAAGGTTTGGAAATACAGAACTTGTTTCATCATTCTTTAGTGAAAATGGTGATATTGGTGTTCCTCTTGGAGCACCAAATAGAGGAACTTCGGGTCACATGGATAATATTTCCTCGTCAGGCATTGGAACTTCTTGGTACAAAGGGGGCCGTGCAGTCAATGGTGGTGTTAGGATGAATGTCAATGTAGTGCCATATGGCCAAAACACCCCCGAGGATTCTAAAAACCTTTTCGCAGATCTTAATCCCTTCCAGATTAAAGGAACTGGAAAGTCTGTTGTACACAATAAGCCCACGGATAATAAAGTTGATGAGCTTCAGGGACTGAGAAACAACCCTGTCCCTGGTCGACCACCTGTACCACAAATGTGGAAGAATCGACATGCTTACAATGAAGTTCCCGGGAAAAAAGGGTATGATTATGTAGGGGGCCTTGTTCCAAGAATTAAGAATGAACCTACAGATTATAATACATTGATGTCATCATCTTCCAGCTCCACCACGTCTGAGAAGATCAATTCGGCTGGTTTAAAATCAGCTAATACAAATATCCCAGGCAGAAATATTGATTCTAGAAACTCAATATCTGCTACCAGTTCAGAATTGGCACCTAGTACAAGTCAGCTCAGTAAACTACCTTTTGTTGAGGAACAGAACAGTAAATCAAGTGGAGAACATCCTGAAAATGGGGAGAACATGCGGAATGAAATCAGTGTGGACAGAGAGAATGAAAATATAATTGGATTCCAAGATCGAAGAAAAAACATATTTATGGGTACCAATTTAAAATTAATGGATTTGGAAAGTCCCAGCTCATCTGTTGATTCAAATAAGAGTAGGGCTGAGCAAGTATTTGATGACGTAGATGTGAGTGAATGTGAAATCCGTTGGGAAGATCTGGTTATTGGTGAAAGAATCGGGCTAGGTTCCTATGGTGAGGTCTACCATGCTGATTGGAATGACACGGAGGTTGCTGTGAAAAAGTTCTTGGACCAGGACTTTTCAGGTGCTGCTTTAGCCGAGTTCAGAAGAGAAGTAAAAATAATGAGACGGTTGCGTCATCCAAATGTCGTTCTTTTCATGGGTGCCGTCACTCGTCCTCCTAACCTCTCTATCATCACTGAGTTTCTTCCAAGAGGAAGCTTGTATCGGATAATACACCGCCCTCATTGTCAAGTTGATGAGAAGCGGAGAATAAAAATGGGTCTTGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGCACACCAACTATTGTCCACCGGGATCTGAAGTCACCAAATCTCTTGGTTGATAAGAACTGGAATGTGAAGGTATGTGATTTTGGGTTGTCACGCTTGAAGCACAATACCTTCTTGTCATCAAAATCCACTGGAGGAACGCCTGAGTGGATGGCACCCGAAGTTCTTCGTAATGAACCCTCAAATGAGAAATGTGATGTATATAGCTTTGGAGTAATTCTATGGGAGCTTGCTACTTTGAGACTACCTTGGAGTGGGATGAACCCGATGCAAGTTGTTGGTGCAGTAGGGTTCCAAAACCGCCGCCTTGAAATCCCGAAAGAAGTTGACCCCTTGGTAGCGAGGATAATTTTTGAATGTTGGCAAACGGAGCCGAATTTGCGCCCCTCGTTTGCTCAGATCACTGTAGCTCTCAAGCCCTTGCAGCGACTCGTCATTTCTTCAAATCTGGACCAGCCAAGCTCGCCCCTGGCTCAAGAGATTTCAGTAAATTCTACTCCTTGA 2916 44.41 MKHIFKKLHIGSNHEPNRSNESPAASVISPSCAPDQRTSSGQTSGNSQASPASSSPSVVTVPAGGNTATPASPASNRPDYISSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGSNRIDTVVRDRDEAAEALSRQYWEYNLIDYEEKVVDGFYDVYGISATTQGKMPSLTDLESSLGSSGYEAVVVNIAIDHALGELVQIAQCIADCPGTEIGVLVQRLAELVTGNMGGPVKDPNIMLARWMERNTELRMSLHTSILPIGSINIGLLRHRALLFKVLADKIRMPCRLVKGSHYTGIEEDAVNLIKLEDEREYLIDLMAAPGALIPTDILTAKDSSSKPYNPKISKLPPLHTLNSRISFSKPTSSPDEGSSQSSVVESSFLLDGKRRFGNTELVSSFFSENGDIGVPLGAPNRGTSGHMDNISSSGIGTSWYKGGRAVNGGVRMNVNVVPYGQNTPEDSKNLFADLNPFQIKGTGKSVVHNKPTDNKVDELQGLRNNPVPGRPPVPQMWKNRHAYNEVPGKKGYDYVGGLVPRIKNEPTDYNTLMSSSSSSTTSEKINSAGLKSANTNIPGRNIDSRNSISATSSELAPSTSQLSKLPFVEEQNSKSSGEHPENGENMRNEISVDRENENIIGFQDRRKNIFMGTNLKLMDLESPSSSVDSNKSRAEQVFDDVDVSECEIRWEDLVIGERIGLGSYGEVYHADWNDTEVAVKKFLDQDFSGAALAEFRREVKIMRRLRHPNVVLFMGAVTRPPNLSIITEFLPRGSLYRIIHRPHCQVDEKRRIKMGLDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPLVARIIFECWQTEPNLRPSFAQITVALKPLQRLVISSNLDQPSSPLAQEISVNSTP 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2234623 2241264 - Conep05aG0054800.1 Cone5ag0529 437547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0529 971 FunFam Serine/threonine-protein kinase isoform 1 681 768 - -
Cone5ag0529 971 Pfam Protein tyrosine and serine/threonine kinase 691 940 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0529 971 CDD STKc_MAP3K-like 696 939 - -
Cone5ag0529 971 PANTHER SERINE-THREONINE PROTEIN KINASE 38 943 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone5ag0529 971 Gene3D Transferase(Phosphotransferase) domain 1 769 952 - -
Cone5ag0529 971 MobiDBLite consensus disorder prediction 538 627 - -
Cone5ag0529 971 MobiDBLite consensus disorder prediction 1 79 - -
Cone5ag0529 971 MobiDBLite consensus disorder prediction 479 514 - -
Cone5ag0529 971 Gene3D Phosphorylase Kinase; domain 1 683 767 - -
Cone5ag0529 971 ProSitePatterns Protein kinases ATP-binding region signature. 696 718 IPR017441 GO:0005524(InterPro)
Cone5ag0529 971 SMART serkin_6 690 945 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0529 971 Pfam Ethylene-responsive protein kinase Le-CTR1 135 330 - -
Cone5ag0529 971 PRINTS Tyrosine kinase catalytic domain signature 913 935 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0529 971 PRINTS Tyrosine kinase catalytic domain signature 850 860 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0529 971 PRINTS Tyrosine kinase catalytic domain signature 764 777 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0529 971 PRINTS Tyrosine kinase catalytic domain signature 803 821 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0529 971 PRINTS Tyrosine kinase catalytic domain signature 869 891 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0529 971 SUPERFAMILY Protein kinase-like (PK-like) 679 958 IPR011009 -
Cone5ag0529 971 MobiDBLite consensus disorder prediction 15 79 - -
Cone5ag0529 971 ProSiteProfiles Protein kinase domain profile. 690 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0529 971 MobiDBLite consensus disorder prediction 611 627 - -
Cone5ag0529 971 MobiDBLite consensus disorder prediction 544 610 - -
Cone5ag0529 971 FunFam PAS domain-containing protein tyrosine kinase family protein 768 957 - -
Cone5ag0529 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0268 Cone-Chr20:1190376 Cone5ag0529 Cone-Chr5:2234623 2.83E-201 dispersed
Cone4ag1661 Cone-Chr4:12479695 Cone5ag0529 Cone-Chr5:2234623 1.66E-222 dispersed
Cone5ag0529 Cone-Chr5:2234623 Cone7ag1292 Cone-Chr7:9521345 1.56E-221 dispersed
Cone1ag1732 Cone-Chr1:58090753 Cone5ag0529 Cone-Chr5:2234623 0 wgd
Cone4ag1290 Cone-Chr4:10664639 Cone5ag0529 Cone-Chr5:2234623 2.18E-104 wgd
Cone5ag0529 Cone-Chr5:2234623 Cone7ag0269 Cone-Chr7:1118657 1.19E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82831 PF00403 HMA 4.70E-18 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0529 - - - 0.0