Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0535 ATGAATGGTCTTACCCATCTGCATCCAGATTACTCTGAGTTTGTTGAACTCGATCCAACTGGCAGATATGGCAGATATAACGAAATCCTTGGCAAAGGAGCTTCCAAAATAGTTTACCGAGCATTTGATGAGTATGAAGGAATTGAAGTTGCTTGGAATCAGGTCAAGCTCTATGATTTCCTACAAAGCCCAGAAGATCTGGAAAGACTATACAGTGAGATCCATCTACTCAAGACATTAAAGCATAATAACATTATGAAATTCTACACCTCTTGGGTTGATACTGCTAATAGGAACATCAATTTTGTCACTGAAATGTTCACTTCTGGAACTCTCAGACAATATAGGCTAAAGCATAGGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGTAGACAGATTCTGAAAGGTCTTCTCTACTTACATAGCCATGATCCTCCTGTTATCCATAGAGATCTAAAGTGTGACAACATCTTCATTAATGGGAATCAAGGGGAAGTCAAAATTGGAGATCTTGGCCTCGCTGCCGTTCTCAAAAAATCTCATGCTGCTCATTGTGTTGGGACGCCTGAGTTTATGGCACCAGAAGTGTATGAAGAGGCTTATAATGAATTAGTAGATATTTATTCTTTCGGAATGTGCATCTTGGAAATGGTTACTTTTGAATATCCTTATAGTGAATGTACTCATCCTGCTCAGATATACAAGAAAGTTATTTCCGGGAAAAAGCCAGATGCTTTGTACAAAGTGAAGGATCCAGAAGTGAGACAATTTGTTGAAAAATGCTTGGCAACAGTGTCACTTAGGCTTTCAGCTGGGGAGCTACTTGACGACCCGTTTCTTCAGATCGATGATTGTGAATACGATTCAAGATCCTTGCATTGTAGAAGAGAATTTGATAACATAAGTCCTATTATGACACAGCCTTTCCTTGAATTTAATGGAAGTAGAAACTGCACCATTAGTAATGGATATTCAAATGATTATTGCTTTGAATCCTCTAATGAATGGGCGTACCAACCAATCATAAACAGTCTTCCTGGACTTGAACTATTCAACTGCCATGATGATAATGATGATGATGATCATTTAGAAGATATTGATGTCAGCATTAAAGGCAAGATGGGAGAAGATGGTAGCATCTTTTTAAGACTCCGAATTTCCGATAAAGAAGGCCCTACCCGGAACATCTATTTCCCATTTGACATTGAAATGGACACAGCATTAAGCGTAGCAACTGAAATGGTTGCCGAGCTTGATATGACGGACCATGATGTGACCAGAATAGCTGATATGATTGATGGTGAGATTGTTTCCTTGGTGCCTGAATGGAGGTCTGGTCCAGGATTAGAGGAAACTCCTAGATTTACTTCGACCCGAAATAAATGGATGCACTTCGATGCACGGCCGGTTTGA 1416 39.62 MNGLTHLHPDYSEFVELDPTGRYGRYNEILGKGASKIVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYSEIHLLKTLKHNNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILKGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAVLKKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLSAGELLDDPFLQIDDCEYDSRSLHCRREFDNISPIMTQPFLEFNGSRNCTISNGYSNDYCFESSNEWAYQPIINSLPGLELFNCHDDNDDDDHLEDIDVSIKGKMGEDGSIFLRLRISDKEGPTRNIYFPFDIEMDTALSVATEMVAELDMTDHDVTRIADMIDGEIVSLVPEWRSGPGLEETPRFTSTRNKWMHFDARPV 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2272794 2275714 - Conep05aG0055400.1 Cone5ag0535 437553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0535 471 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0535 471 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 449 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone5ag0535 471 SMART serkin_6 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0535 471 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Cone5ag0535 471 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Cone5ag0535 471 Gene3D - 379 446 - -
Cone5ag0535 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0535 471 CDD STKc_WNK 22 281 - -
Cone5ag0535 471 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
Cone5ag0535 471 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0535 471 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Cone5ag0535 471 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Cone5ag0535 471 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 382 435 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0933 Cone-Chr2:35077677 Cone5ag0535 Cone-Chr5:2272794 2.91E-170 dispersed
Cone4ag0242 Cone-Chr4:1093750 Cone5ag0535 Cone-Chr5:2272794 3.69E-146 dispersed
Cone5ag0535 Cone-Chr5:2272794 Cone7ag0248 Cone-Chr7:1045463 3.08E-220 dispersed
Cone1ag1727 Cone-Chr1:58069521 Cone5ag0535 Cone-Chr5:2272794 0 wgd
Cone10ag0695 Cone-Chr10:3509380 Cone5ag0535 Cone-Chr5:2272794 2.74E-151 wgd
Cone3ag0714 Cone-Chr3:3663301 Cone5ag0535 Cone-Chr5:2272794 9.80E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82832 PF18376 MDD_C 2.40E-65 CL0677 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0535 K08867 - cit:102607812 769.615