Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0543 ATGGCGGGTAACTCAGGAAAGGGGTTAGTGGATGATTTCTTGGAGCAAATTTTGGGAGAGCGTGGTGGTGGCGGTGGGTATGGTGGAGGAGGTGGGATGATGAATATGAATACGGTGTTGCAGCTTGTATCTGGCGGTGCCGACGGTGGTTCTGGTGGTAGTGGTGGTTTGAGAGGAGGGATGGGGATTCAGGGGATGAGGAGTATGGGCTTAAATTTAGAACAACAGGGGTTTTCTAGTAACACTGTCTCCACCACCAACGACAATGATAACATTAATGCAAGTGATTCAGTCCATATGAGGAGTTTGTTTCCGACGTTTGGAGAATTACAGACTCATCAGTCTATCCGGCCAACCCCGCCACCTCCCCAATTCCATCAGCCTTATCATAGCCAGCAGCCAACATCCAGGGCAGGTGGTGGACCCCACCCACCCTCCTTCCGTCCAAGGGTGCGAGCAAGACGTGGGCATGCAACAGATCCTCATAGTATTGCAGAACGGTTACGCCGTGAAAGAATCGCCGAAAGAATGAAAGCTCTACAGGAGTTGGTCCCTAGTGCCAACAAGACAGATAGGGCGGCCATGCTGGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAAGTTAAGGTTTTGAGCATGAGTAAACTGGGTGGAGCTGGTGCAGTTGCTCAGCTTGTAGTTGATGTTCCCTTATCATCAATAGAAGGGATTGAAAGTGGGAATCATGAGCAAGCTTGGGAAAACTGGTCAACAGATGGGACGGAGCAGCAAGTGGCTAAATTGATGGAAGAAGATGTAGGCACAGCCATGCAATTTCTTCAATCCAAGGCTCTATGCATTATGCCCATATCACTAGCCTCTGCCATTTTCCCTACATGCCACCCTGATAGTACACAAACAAGAATGGTCAAGCTGGAATCCGATGCTCCGTCATAG 942 49.15 MAGNSGKGLVDDFLEQILGERGGGGGYGGGGGMMNMNTVLQLVSGGADGGSGGSGGLRGGMGIQGMRSMGLNLEQQGFSSNTVSTTNDNDNINASDSVHMRSLFPTFGELQTHQSIRPTPPPPQFHQPYHSQQPTSRAGGGPHPPSFRPRVRARRGHATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSKLGGAGAVAQLVVDVPLSSIEGIESGNHEQAWENWSTDGTEQQVAKLMEEDVGTAMQFLQSKALCIMPISLASAIFPTCHPDSTQTRMVKLESDAPS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2302543 2304538 + Conep05aG0056300.1 Cone5ag0543 437561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0543 313 MobiDBLite consensus disorder prediction 112 163 - -
Cone5ag0543 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 217 IPR036638 GO:0046983(InterPro)
Cone5ag0543 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 69 289 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone5ag0543 313 Gene3D - 152 214 IPR036638 GO:0046983(InterPro)
Cone5ag0543 313 FunFam Basic helix-loop-helix transcription factor 152 214 - -
Cone5ag0543 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983(InterPro)
Cone5ag0543 313 Pfam Helix-loop-helix DNA-binding domain 162 207 IPR011598 GO:0046983(InterPro)
Cone5ag0543 313 SMART finulus 163 212 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0586 Cone-Chr17:3085417 Cone5ag0543 Cone-Chr5:2302543 5.85E-83 dispersed
Cone20ag0823 Cone-Chr20:5833869 Cone5ag0543 Cone-Chr5:2302543 1.03E-83 dispersed
Cone4ag0604 Cone-Chr4:2769142 Cone5ag0543 Cone-Chr5:2302543 6.95E-49 dispersed
Cone5ag0543 Cone-Chr5:2302543 Cone7ag0587 Cone-Chr7:2818945 6.80E-51 dispersed
Cone1ag1718 Cone-Chr1:58034294 Cone5ag0543 Cone-Chr5:2302543 3.46E-166 wgd
Cone10ag0673 Cone-Chr10:3253192 Cone5ag0543 Cone-Chr5:2302543 3.75E-108 wgd
Cone3ag0699 Cone-Chr3:3570636 Cone5ag0543 Cone-Chr5:2302543 6.37E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46133 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0543 - - - 0.0