Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0565 ATGCAGAGACAGAGTCACTTCTTCTTCCTCTGCTTCTTCATAATTTCCCTCCCTCTGGATTTTGCTAATGATGATGATAATCATCATGAATTGTCAACCTTATTGTCAATAAAATCGACCCTCATTAACCCTTTAAACTACCTCAAAGATTGGCAGTCTCAAACAAACTCGACTGAAGAGAAAAAGGCGTCAGACCATTGTTCGTGGACAGGAATACTCTGCAACTCTAATGGCTTTGTTGAAAAACTAGACCTGTCCAATATGAATCTAAGTGGCTCCATTTCAGACAACATTCAAGAACTTAAAAGCCTATCTTACCTCAACATTTCTTGTAATGGGTTCTCTTCTTCTTTGCCTAATTCTCTACCAAATCTCACTTCACTCAAGAACATTGACTTAAGTCAGAACGACTTCATAGGCAGCTTCCCAACTGGTCTAATTGGAGGAGCTTCAGCTTTGACTTCAGTCAACGCATCGAGCAACAATTTCGTCGGAAATCTTCCGGAAGATCTTGCCAATGCAGCATCGCTCGAGGTATTAGATATTAGAGGGAACTTCTTTCAAGGTTCAGTTCCTACTTTCTTGAAGAACTTGCAGAAGTTGAAGTTTCTTGGTTTAGCTGGAAACAATTTTACTGGAAGAATTCCTAGTGAGCTTGGCCAACTTTCTTCTTTAGAGACTATGATTTTAGGATACAATGGATTTGAAGGCGGAATTCCGAAAGAATTCGGAAATCTTACAAATCTTTTGTATTTAGATTTGGCAGTGGGGAGCCTTGAAGGTGAAATTCCAGCTGAATTGAGCAGACTTAAGAAACTCAATACAGTTTATTTGTACAGAAATAATTTTTCTGGAAAGATCCCGTCAGAAATCGTTAACATTACTTCACTGGTTTATCTAGATCTTTCTGATAATTTGATTTCAGGAGAGATTCCAGAAGAAGTTGCAGAATTGAAGAATCTGCAGCTTTTGAACTTAATGTGTAACAATCTCACCGGTCCAATCCCGAGCAAGCTGGCTGAGTTGACCAACTTAGAAGTGCTTGGTTTGTGGAAAAATTCATTGACGGGTTCTTTACCATTGGATCTTGGCCAGAATTCTCCACTGCAATGGTTGGATGTATCTTCAAATTTATTATCAGGTGAGATCCCACCTGGTTTATGTCAAAATGGTAATCTCACTAAACTCATCCTCTTTAATAACTCTTTCTCGGGTCCGATCCCAATAGGCCTTTCGACTTGTTTGTCATTAGTTCGAGTTAGAATTCAAAACAATCTCATTTCTGGAACAATTCCGGTCGGATTCGGTAATCTTTCGATCCTCCAAAGGCTAGAATTAGCCCATAACAATCTCACCGGAAAAATCCCGGAAGATATTTCTTTATCCGCATCACTTTCTTTCATTGATGTTTCTTCAAACCACCTTCAATACTCCCTCCCTTATAACATCTTCTCCATTCCGAATCTTCAAACCTTCATGGCTGCTAATAACTACTTGGAAGGGAATATACAGGACGAGTTTCAAGACTGCCCTTCTTTGTCCGTGCTCGATTTATCAAGCAATCGATTTTCTGGGAAAATCCCGGGAAGTATTGCTTCATGTGAAAGGCTAGTAAATCTTAACCTCAGGAAAAACGACTTTAATGGATCAATCCCTAGAGCTATAGCCACAATGCCAACTTTATCAGTGCTCGATCTGTCCAACAATTCTCTTACGAGACAAATTCCGAGAAATTTTGGTTCCTCACCGGCACTGGAGATGTTAAACCTGTCTTATAACAAACTGGAGGGTCCAGTTCCTACAAATGGCATTCTAATGGCCATAAATCCTAATGACCTTGTCGGAAATCCCGGACTTTGTGGAGGAGTACTTCCGCCTTGTAATAGAAGCTTTTCTTCGACAATCAGAAAGATAAAGATTAGGTGGATTGATCACATTGTGAAAGGGCTGATCATTGGAATTTGTACAGTTTTCATTCTAGGCCTTTCGTTTTTTACGGGCAGGTCATTATATCAAAGATGGTATCTTTACGACAGTTTCTTCTATGATTGGTTCAAGAAGAGCAATGAAGAATGGCCGTGGAGATTAGTAGCATTCCAAAGGGTCAGCTTCACTACTAGTGACATTCTAGACTGCATAAAGGAATCCAACATTATCGGCATGGGTGGGACCGGGATTGTTTACAAAGCTGAGACTTTCGGGAAGCCTGAAACAGTTGCGGTCAAGAAGCTATGGAGACCACCTACTACAGATATCGAAAATGGCCATGATTTGCGTGGCGAAGTGAATCTTCTAGGGCGGTTAAGGCACCGGAATATTCTCCGGCTTATGGGGTATCTCCACAACCAGACGGACTTGATGATATTGTACGAGTATATGCCGAATGGAAACCTTGGAAAAGCACTGCATGGGAAAGAGCAGGATCAGAAGTTGTTAGTTGATTGGGTTTTGAGGCATAATATTGCAGTCGGAGTAGCACAAGGATTGAACTATCTTCACCATGATTGTCACCCTGCAGTTATTCATAGAGATATCAAGTCGAATAATATATTGCTTGATGTACATTTCGAGGCGAGGATTGCGGATTTCGGGTCGGCAAAAATGATGGTCCCTAACAATGAAACAGTTTCTATGGTGAATATGGATATTCTCTGA 2655 40.56 MQRQSHFFFLCFFIISLPLDFANDDDNHHELSTLLSIKSTLINPLNYLKDWQSQTNSTEEKKASDHCSWTGILCNSNGFVEKLDLSNMNLSGSISDNIQELKSLSYLNISCNGFSSSLPNSLPNLTSLKNIDLSQNDFIGSFPTGLIGGASALTSVNASSNNFVGNLPEDLANAASLEVLDIRGNFFQGSVPTFLKNLQKLKFLGLAGNNFTGRIPSELGQLSSLETMILGYNGFEGGIPKEFGNLTNLLYLDLAVGSLEGEIPAELSRLKKLNTVYLYRNNFSGKIPSEIVNITSLVYLDLSDNLISGEIPEEVAELKNLQLLNLMCNNLTGPIPSKLAELTNLEVLGLWKNSLTGSLPLDLGQNSPLQWLDVSSNLLSGEIPPGLCQNGNLTKLILFNNSFSGPIPIGLSTCLSLVRVRIQNNLISGTIPVGFGNLSILQRLELAHNNLTGKIPEDISLSASLSFIDVSSNHLQYSLPYNIFSIPNLQTFMAANNYLEGNIQDEFQDCPSLSVLDLSSNRFSGKIPGSIASCERLVNLNLRKNDFNGSIPRAIATMPTLSVLDLSNNSLTRQIPRNFGSSPALEMLNLSYNKLEGPVPTNGILMAINPNDLVGNPGLCGGVLPPCNRSFSSTIRKIKIRWIDHIVKGLIIGICTVFILGLSFFTGRSLYQRWYLYDSFFYDWFKKSNEEWPWRLVAFQRVSFTTSDILDCIKESNIIGMGGTGIVYKAETFGKPETVAVKKLWRPPTTDIENGHDLRGEVNLLGRLRHRNILRLMGYLHNQTDLMILYEYMPNGNLGKALHGKEQDQKLLVDWVLRHNIAVGVAQGLNYLHHDCHPAVIHRDIKSNNILLDVHFEARIADFGSAKMMVPNNETVSMVNMDIL 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2414973 2418523 - Conep05aG0058600.1 Cone5ag0565 437583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0565 884 PRINTS Leucine-rich repeat signature 513 526 - -
Cone5ag0565 884 PRINTS Leucine-rich repeat signature 558 571 - -
Cone5ag0565 884 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 27 185 - -
Cone5ag0565 884 SUPERFAMILY L domain-like 29 254 - -
Cone5ag0565 884 SMART serkin_6 713 884 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0565 884 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Cone5ag0565 884 Gene3D Ribonuclease Inhibitor 388 628 IPR032675 -
Cone5ag0565 884 Gene3D Transferase(Phosphotransferase) domain 1 701 882 - -
Cone5ag0565 884 SUPERFAMILY RNI-like 204 600 - -
Cone5ag0565 884 FunFam Os07g0541700 protein 793 883 - -
Cone5ag0565 884 Gene3D Ribonuclease Inhibitor 192 286 IPR032675 -
Cone5ag0565 884 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 Pfam Leucine Rich Repeat 103 125 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 Pfam Leucine Rich Repeat 369 389 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 Pfam Leucine Rich Repeat 296 317 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 Pfam Leucine Rich Repeat 392 414 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 Pfam Leucine Rich Repeat 200 222 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 ProSitePatterns Protein kinases ATP-binding region signature. 719 743 IPR017441 GO:0005524(InterPro)
Cone5ag0565 884 ProSiteProfiles Protein kinase domain profile. 713 884 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0565 884 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 877 IPR050647 -
Cone5ag0565 884 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 186 286 - -
Cone5ag0565 884 SMART LRR_typ_2 101 124 IPR003591 -
Cone5ag0565 884 SMART LRR_typ_2 438 462 IPR003591 -
Cone5ag0565 884 SMART LRR_typ_2 294 318 IPR003591 -
Cone5ag0565 884 SMART LRR_typ_2 125 149 IPR003591 -
Cone5ag0565 884 SMART LRR_typ_2 369 390 IPR003591 -
Cone5ag0565 884 SMART LRR_typ_2 558 582 IPR003591 -
Cone5ag0565 884 SMART LRR_typ_2 198 222 IPR003591 -
Cone5ag0565 884 SMART LRR_typ_2 342 366 IPR003591 -
Cone5ag0565 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0565 884 SUPERFAMILY Protein kinase-like (PK-like) 700 876 IPR011009 -
Cone5ag0565 884 Pfam Protein kinase domain 715 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0565 884 Gene3D Ribonuclease Inhibitor 287 387 IPR032675 -
Cone5ag0565 884 Pfam Leucine rich repeat N-terminal domain 28 75 IPR013210 -
Cone5ag0565 884 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 369 631 - -
Cone5ag0565 884 Pfam Leucine rich repeat 554 595 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 Pfam Leucine rich repeat 417 475 IPR001611 GO:0005515(InterPro)
Cone5ag0565 884 Pfam Leucine rich repeat 487 547 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0565 Cone-Chr5:2414973 Cone1ag1071 Cone-Chr1:55317892 5.27E-59 dispersed
Cone1ag0874 Cone-Chr1:54387053 Cone5ag0565 Cone-Chr5:2414973 2.83E-196 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone5ag0565 Cone-Chr5:2414973 1.96E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82834 PF00782 DSPc 3.20E-10 CL0031 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0565 - - - 0.0