Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0599 ATGGGTACTCGAACACAGCAACGATGCCGAGAAGAGGACGACGACGAGCACCTAGCTGGCGGTCGCGGTGCCGCCACAATTTCCGGCCAATCCTTGTCCATGAGCGGCAGCGTCGGTTCACCTTCCAGTCGTAGCGAGCAAACCATGGCTACGCCGGCTAGTGACAACACTTTTCTCCGATTAAACGACCTCGACATTCATGGCGACGATGCGGGGTCCCAAGGCGCTAACAAGAAGAAAAAGAGAGGTCAACGAGCGGTTGGAAGCGATAAGAGTGGGAGAGGACTACGCCAATTCAGCATGAAAGTCTGTGAGAAAGTACAGAGCAAGGGAAGAACGACCTACAATGAGGTTGCAGATGAACTTGTAGCGGAGTTTGCTGATCCCAGAAACAGTATTGCTTCCCCGGATCAGCAGCAATATGATGAGAAAAACATTCGACGAAGGGTGTATGATGCCCTGAATGTTCTGATGGCTATGGACATTATATCCAAGGATAAAAAAGAGATACAATGGAAGGGCCTCCCCCGTACTACCTTGAATGATCTTGAAGAACTAAAGACAGAACGACTCGGACTAAGAAATAGGATTGAGAAGAAAGCTGCATATTTGCAAGAACTGGAGGAACAGTACATAGGTCTTCAGAATCTCATACAGCGGAATGAGCAGTTATGCAGCTCTGGAAATGCTCCTAGTGGAGGTGTAGCTTTGCCGTTTATTCTGGTTCAGACACGGCCCCATGCAACTGTAGAGGTAGAGATATCGGAAGATATGCAACTGGTACATTTCGACTTCAACAGCACCCCTTTTGAGCTCCATGACGACAACTATGTATTGAAAGGGATGAAATTCTGCGAAAGATCACAGGGTGATAATATCCCACCTCAAAATCTTATCATCAATGGAGGGGAAGGAGGTTCCGCCATGCCTACTGTGTACCAACAACACCGGATCCCTCTTCCATCAGCTTCAATGCCTATAAGGACTCCAACCTCGCCCCCTATTCCTGGCATCCTAAAAGCACGTGTCAAGCATGAGCAACCTTGA 1047 48.42 MGTRTQQRCREEDDDEHLAGGRGAATISGQSLSMSGSVGSPSSRSEQTMATPASDNTFLRLNDLDIHGDDAGSQGANKKKKRGQRAVGSDKSGRGLRQFSMKVCEKVQSKGRTTYNEVADELVAEFADPRNSIASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTTLNDLEELKTERLGLRNRIEKKAAYLQELEEQYIGLQNLIQRNEQLCSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKGMKFCERSQGDNIPPQNLIINGGEGGSAMPTVYQQHRIPLPSASMPIRTPTSPPIPGILKARVKHEQP 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2566800 2570178 - Conep05aG0062000.1 Cone5ag0599 437617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0599 348 SMART DP_2 181 345 IPR014889 -
Cone5ag0599 348 Gene3D Transcription factor DP 180 300 IPR038168 -
Cone5ag0599 348 SUPERFAMILY E2F-DP heterodimerization region 180 311 IPR037241 -
Cone5ag0599 348 PANTHER TRANSCRIPTION FACTOR DP 24 314 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cone5ag0599 348 PIRSF Txn_factor_DP 4 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cone5ag0599 348 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone5ag0599 348 FunFam Transcription factor-like protein DPB 180 304 - -
Cone5ag0599 348 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone5ag0599 348 SUPERFAMILY Winged helix DNA-binding domain 94 175 IPR036390 -
Cone5ag0599 348 Gene3D - 86 179 IPR036388 -
Cone5ag0599 348 MobiDBLite consensus disorder prediction 1 20 - -
Cone5ag0599 348 FunFam Transcription factor-like protein DPB 86 179 - -
Cone5ag0599 348 CDD DP_DD 179 282 IPR014889 -
Cone5ag0599 348 Pfam Transcription factor DP 182 292 IPR014889 -
Cone5ag0599 348 MobiDBLite consensus disorder prediction 62 77 - -
Cone5ag0599 348 Coils Coil 190 224 - -
Cone5ag0599 348 MobiDBLite consensus disorder prediction 26 58 - -
Cone5ag0599 348 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0894 Cone-Chr1:54531426 Cone5ag0599 Cone-Chr5:2566800 1.45E-234 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46138 PF03810 IBN_N 2.80E-06 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0599 K04683 - csv:101216863 552.362