Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0599 ATGGGTACTCGAACACAGCAACGATGCCGAGAAGAGGACGACGACGAGCACCTAGCTGGCGGTCGCGGTGCCGCCACAATTTCCGGCCAATCCTTGTCCATGAGCGGCAGCGTCGGTTCACCTTCCAGTCGTAGCGAGCAAACCATGGCTACGCCGGCTAGTGACAACACTTTTCTCCGATTAAACGACCTCGACATTCATGGCGACGATGCGGGGTCCCAAGGCGCTAACAAGAAGAAAAAGAGAGGTCAACGAGCGGTTGGAAGCGATAAGAGTGGGAGAGGACTACGCCAATTCAGCATGAAAGTCTGTGAGAAAGTACAGAGCAAGGGAAGAACGACCTACAATGAGGTTGCAGATGAACTTGTAGCGGAGTTTGCTGATCCCAGAAACAGTATTGCTTCCCCGGATCAGCAGCAATATGATGAGAAAAACATTCGACGAAGGGTGTATGATGCCCTGAATGTTCTGATGGCTATGGACATTATATCCAAGGATAAAAAAGAGATACAATGGAAGGGCCTCCCCCGTACTACCTTGAATGATCTTGAAGAACTAAAGACAGAACGACTCGGACTAAGAAATAGGATTGAGAAGAAAGCTGCATATTTGCAAGAACTGGAGGAACAGTACATAGGTCTTCAGAATCTCATACAGCGGAATGAGCAGTTATGCAGCTCTGGAAATGCTCCTAGTGGAGGTGTAGCTTTGCCGTTTATTCTGGTTCAGACACGGCCCCATGCAACTGTAGAGGTAGAGATATCGGAAGATATGCAACTGGTACATTTCGACTTCAACAGCACCCCTTTTGAGCTCCATGACGACAACTATGTATTGAAAGGGATGAAATTCTGCGAAAGATCACAGGGTGATAATATCCCACCTCAAAATCTTATCATCAATGGAGGGGAAGGAGGTTCCGCCATGCCTACTGTGTACCAACAACACCGGATCCCTCTTCCATCAGCTTCAATGCCTATAAGGACTCCAACCTCGCCCCCTATTCCTGGCATCCTAAAAGCACGTGTCAAGCATGAGCAACCTTGA 1047 48.42 MGTRTQQRCREEDDDEHLAGGRGAATISGQSLSMSGSVGSPSSRSEQTMATPASDNTFLRLNDLDIHGDDAGSQGANKKKKRGQRAVGSDKSGRGLRQFSMKVCEKVQSKGRTTYNEVADELVAEFADPRNSIASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTTLNDLEELKTERLGLRNRIEKKAAYLQELEEQYIGLQNLIQRNEQLCSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKGMKFCERSQGDNIPPQNLIINGGEGGSAMPTVYQQHRIPLPSASMPIRTPTSPPIPGILKARVKHEQP 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2566800 2570178 - Conep05aG0062000.1 Cone5ag0599 437617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0599 348 SMART DP_2 181 345 IPR014889 -
Cone5ag0599 348 Gene3D Transcription factor DP 180 300 IPR038168 -
Cone5ag0599 348 SUPERFAMILY E2F-DP heterodimerization region 180 311 IPR037241 -
Cone5ag0599 348 PANTHER TRANSCRIPTION FACTOR DP 24 314 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cone5ag0599 348 PIRSF Txn_factor_DP 4 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cone5ag0599 348 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone5ag0599 348 FunFam Transcription factor-like protein DPB 180 304 - -
Cone5ag0599 348 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone5ag0599 348 SUPERFAMILY Winged helix DNA-binding domain 94 175 IPR036390 -
Cone5ag0599 348 Gene3D - 86 179 IPR036388 -
Cone5ag0599 348 MobiDBLite consensus disorder prediction 1 20 - -
Cone5ag0599 348 FunFam Transcription factor-like protein DPB 86 179 - -
Cone5ag0599 348 CDD DP_DD 179 282 IPR014889 -
Cone5ag0599 348 Pfam Transcription factor DP 182 292 IPR014889 -
Cone5ag0599 348 MobiDBLite consensus disorder prediction 62 77 - -
Cone5ag0599 348 Coils Coil 190 224 - -
Cone5ag0599 348 MobiDBLite consensus disorder prediction 26 58 - -
Cone5ag0599 348 MobiDBLite consensus disorder prediction 1 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0599 K04683 - - csv:101216863 552.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0894 Cone-Chr1:54531426 Cone5ag0599 Cone-Chr5:2566800 1.45E-234 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46138 PF03810 IBN_N 2.80E-06 CL0020 Cone TF