Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0602 ATGATGAGGCTTCAAACATACGCGGGTCTAAGTTTGATTTCAACTCTAGTAGTTATTTACCATGCATTTAGCAGTAGAGGCCAGTTTTACCCAGCAATGGTTTATCTATCAACATCTAAGATCTGCCTTGTGCTTCTTCTCAACATGGGTCTGGTATTTATGTGCATCTTATGGCAATTAACCAAGAAGGATTTCTCGGTCACATTCCTTGCCATGGTCACAGCTCTCTTGTTAATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAGTACATTGAAACCACTCCATCAGTGCCCAGGTTGTCTCATATCCGGATTATTTCATTCTTGGGATTTCTTCTTGTCCTAGATGGCCTATTTCTGTACAGCTCTGTAAAGAATCTAATACAGACGCAGAAGGCTTCAGTTTCCCTATTCTTCTCATTTGAGTACATGATACTTGCAACCACGACCGTGTCAACCTTTGTGAAGTACGTTTTCTATGTCAGTGACATGCTAATGGAGGGACAATGGGAAAAGAAACCTGTATACACATTTTACTTGGAACTTATCAGAGACTTGCTTCACTTGTCTATGTATCTCTGCTTCTTCCTGGTGATATTCATGAACTATGGGGTGCCTTTGCACTTAATTCGGGAGCTGTACGAGACATTTAGGAACTTTAAGAGCCGGGTTGCAGATTACATTCGGTACAGAAAGATCACATCAAATATGAATGATCGTTTTCCAGATGCAACACCCGAAGAACTTACTGCAAGCGACGCAACCTGCATTATTTGTCGTGAAGAGATGACAACAGCAAAGAAACTAATCTGCGGACATCTCTTTCATGTCCATTGCCTCCGGTCCTGGTTGGAGAGACAGTACACTTGTCCAACTTGCAGAGCTCCAGTTGTTCCATCTGAAGGGACAAACACAACTGGAGGTCAGCATGGATTGCGGCCAGATGCTAATCAACGGAGGACTGGAAGCACAGGTACGGCTGCACAGGGCTCAGCTGGTAATGATGTAGCAGGGTATCATTTGACCCGACAGCAGGCCAGACTCCAAGCTGCTGCTGCAGCTGCCTCAATATATGAGAAGTCTTTCGTTTATCCTTCTGCAAACACACTAGTATGGTCACCTGGGTATGCTGTTGTACCTCAGACGCAAAGACCTTTACCCAACTCCATTCATTCAGAATCAAATGGAGAAAGTGTTTCCACGGTACAACCACAACATTTTGCTACCTCTGGTGGGCCTGCAAACTCATTGTTTCCTCAATTTCCGCACCGCTTTTTTGTTCCTTTTCAGTCCCAAGGGGCCAATTTAAATGAGGGAGAAAGGCAAAATGGTGATCTAAGCATTCCAGGCTCCCAGCTTGAAGCTCAGAGAAGATTTTTTGAACATCAGATTGAGGTCCTGCAAAAACATATCCAACTTCTACAGAAGCCAAAAGTTGAGGAAGGCATGAATGTGGGATCCACAACATCTTCAGATATTAAAGGAAAAAATGTTGCATCAGCATCTGCATCTTCTTCCTCATCAGTTCCGGATTGTGGTCGCCATGGTGAAACGGAGGAGATCTGA 1572 44.02 MMRLQTYAGLSLISTLVVIYHAFSSRGQFYPAMVYLSTSKICLVLLLNMGLVFMCILWQLTKKDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPRLSHIRIISFLGFLLVLDGLFLYSSVKNLIQTQKASVSLFFSFEYMILATTTVSTFVKYVFYVSDMLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMNYGVPLHLIRELYETFRNFKSRVADYIRYRKITSNMNDRFPDATPEELTASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQYTCPTCRAPVVPSEGTNTTGGQHGLRPDANQRRTGSTGTAAQGSAGNDVAGYHLTRQQARLQAAAAAASIYEKSFVYPSANTLVWSPGYAVVPQTQRPLPNSIHSESNGESVSTVQPQHFATSGGPANSLFPQFPHRFFVPFQSQGANLNEGERQNGDLSIPGSQLEAQRRFFEHQIEVLQKHIQLLQKPKVEEGMNVGSTTSSDIKGKNVASASASSSSSVPDCGRHGETEEI 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2577987 2582723 + Conep05aG0062300.1 Cone5ag0602 437620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0602 523 SMART ring_2 258 295 IPR001841 -
Cone5ag0602 523 MobiDBLite consensus disorder prediction 484 514 - -
Cone5ag0602 523 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 230 305 - -
Cone5ag0602 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 305 IPR013083 -
Cone5ag0602 523 PANTHER RING ZINC FINGER PROTEIN 2 65 IPR050731 -
Cone5ag0602 523 MobiDBLite consensus disorder prediction 389 416 - -
Cone5ag0602 523 MobiDBLite consensus disorder prediction 484 523 - -
Cone5ag0602 523 Pfam Ring finger domain 257 296 IPR001841 -
Cone5ag0602 523 CDD RING-H2_synoviolin 255 296 - -
Cone5ag0602 523 MobiDBLite consensus disorder prediction 301 333 - -
Cone5ag0602 523 MobiDBLite consensus disorder prediction 301 334 - -
Cone5ag0602 523 ProSiteProfiles Zinc finger RING-type profile. 258 296 IPR001841 -
Cone5ag0602 523 SUPERFAMILY RING/U-box 238 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0866 Cone-Chr15:6589679 Cone5ag0602 Cone-Chr5:2577987 8.91E-22 transposed
Cone1ag0897 Cone-Chr1:54544443 Cone5ag0602 Cone-Chr5:2577987 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0602 K10601 - cit:102610175 713.761