Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0651 ATGGGTGATTCGCTTTTGGAAATTTTCGACGAACTCATAGAAGATGATGAGGATCTTTTTAGTATTTTTGATAAACTAGAAGGTTTAGGATCAGCAGATGACATGCTTAACATGTCAGCAAGTGCCTTGTTATCTTCATGCCAGGTTAATTTGAAAGATCAGACCGAGTTAGAAACAGTAGTAGCGCCAAAAAGCAAGAGGTTGAAGCTTTCTTGTAATAATAATAATGATTCAGATGATCAGGAAGCGAACCGGCCAGATGGGAAACAAACTAGGATGTCTCATATCACGGTGGAGCGCAACCGTCGGAAGCAAATGAACGACCATTTATCCGTCTTGAGGTCCCTTATGCCTTCTTTCTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGGGTGGTGGATTACATTACCGAATTGCAACAAGTTCTACAATCACTAGAAGCCAAGAAGCAGCGAAAAGCTTATAGCGAAGTGTTAAGCCCTAGAGTGCCCATTCCAAGCCCAAGACTACCTTTACCACTTAGTCCTAGATCAAAACCATCTAATAACATATTAAGCCCTAGACTTAACCTACGTCCTATTAGTCCAAGAACACCACAACCCACTAGCCCTTACAATAACAGACCACTACTATTGCAACAATCAGCTGGTAACTATAACCTCTCTCCTACGGGCTCCATCGTTAACTCATCATCACTTGAACCATCCCCATCTCCTTCTTCAACAGCCTCCAATATTATTGTTAATGATAATTATCCCAATGAGCTCGCCACCAATTCGAAATCGGACAAAGCTGAAGTCGAAGTCAAGTTTGCAGGCCCTAACGTGGTTCTGAAGACGGTCTCTCCTCGGATTCCCGGTCTCGCTGTGAAAATAGTTTCTGCTATTGAAGACCTCTCGCTTGAAATTCTCCATGTGGATATTAACACTGCTGAGGAAACCATGCTCAACTCCTTCACCATCAAGGTCGGAATTGAATGCCAACTTAGTGCGGAAGAACTCGCTCAGCTGATTCAGCTAACGTTGTGTTAA 1038 42.87 MGDSLLEIFDELIEDDEDLFSIFDKLEGLGSADDMLNMSASALLSSCQVNLKDQTELETVVAPKSKRLKLSCNNNNDSDDQEANRPDGKQTRMSHITVERNRRKQMNDHLSVLRSLMPSFYVKRGDQASIIGGVVDYITELQQVLQSLEAKKQRKAYSEVLSPRVPIPSPRLPLPLSPRSKPSNNILSPRLNLRPISPRTPQPTSPYNNRPLLLQQSAGNYNLSPTGSIVNSSSLEPSPSPSSTASNIIVNDNYPNELATNSKSDKAEVEVKFAGPNVVLKTVSPRIPGLAVKIVSAIEDLSLEILHVDINTAEETMLNSFTIKVGIECQLSAEELAQLIQLTLC 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2784451 2785744 - Conep05aG0067300.1 Cone5ag0651 437669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0651 345 MobiDBLite consensus disorder prediction 178 198 - -
Cone5ag0651 345 SMART finulus 96 147 IPR011598 GO:0046983(InterPro)
Cone5ag0651 345 MobiDBLite consensus disorder prediction 225 249 - -
Cone5ag0651 345 CDD bHLH_AtFAMA_like 93 166 - -
Cone5ag0651 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 158 IPR036638 GO:0046983(InterPro)
Cone5ag0651 345 PANTHER TRANSCRIPTION FACTOR FAMA 16 344 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cone5ag0651 345 Pfam Helix-loop-helix DNA-binding domain 92 142 IPR011598 GO:0046983(InterPro)
Cone5ag0651 345 MobiDBLite consensus disorder prediction 157 212 - -
Cone5ag0651 345 Gene3D - 76 156 IPR036638 GO:0046983(InterPro)
Cone5ag0651 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 141 IPR011598 GO:0046983(InterPro)
Cone5ag0651 345 MobiDBLite consensus disorder prediction 68 94 - -
Cone5ag0651 345 MobiDBLite consensus disorder prediction 80 94 - -
Cone5ag0651 345 FunFam Transcription factor SPEECHLESS 81 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0651 Cone-Chr5:2784451 Cone7ag0388 Cone-Chr7:1711919 1.42E-21 dispersed
Cone1ag0958 Cone-Chr1:54816641 Cone5ag0651 Cone-Chr5:2784451 5.81E-202 wgd
Cone14ag0031 Cone-Chr14:240995 Cone5ag0651 Cone-Chr5:2784451 8.08E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46142 PF07969 Amidohydro_3 1.10E-57 CL0034 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0651 K20558 - cit:102617919 318.931