Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0660 ATGAATAAGAAAACAGCAGGGCTCTTGTTCATTTTCTATACAGTCTTCTTTTTTGTTAAGTTCTTCTCCCCTGTCCTTACTGAACCGGTCGAGGACAAGCAAGCATTGCTTAATTTCCTCGATAATATCACTCACACTCGCCTTCTCAACTGGAACCAAACCACTTCTGTCTGCAGAAATTGGACGGGAGTGTTTTGCAATGTTGAGCAATCCAGAGTCATAGCCGTCCGATTACCCGGAGCAGGCTTACTAGGGCCCATCCCGGCCAACACTCTTTCTCGACTTTCCGCACTTCAAACTCTAAGCCTTAGATTGAACGCCTTATCAGGTCCTTTCCCTCCTGATTTCTCCAAGTTAGGTAACCTGAACTCCATTTACTTACAGCACAACAAATTATCTGGTCCATTACCTCCTCATTTTTCTGTTTGGAAGAGCCTTTCTGTCATTGACTTATCGAACAATGCCTTCAATGGGAGCATCCCTTCTTCGCTCTCGAATTTAACCCACCTCACAGCTTTGAATCTTTCTAGAAACTCCCTTTTGGGCGAATTACCCGACCTTAATTTTCCTAGCTTGCAACAGTTAGACTTGTCCAATAACAAACTTACGGGACCCATGCCTCGATCCCTTCAAAGGTTTCCGAGCTGGGCATTTTCCGGAAACAATCTCACAGCAGAAAATGCACTTCCTCCGGCGCTTTCCCTTCAACAGCCTACTGCTCAACCATCCAAGCGAGGTGTAAAAATAAGTGAATCGGCCATATTGGGTATTGTTATAGGAACTTGTGTTGCCATCTTTGCTATAGTTGCCGTTCTGATGATTATTTTCAGCTCAAAGCGAGGAAATAATGAAGATGAGGCAAAGGTGGAAGAAAGGGCGAAACGGAAAGAAGCTTCTGGGAAGAAGAAAAGGGCTGCTTCTTCTGAGATCAAGGAGAAAAGCAACAGCATCACGTTCTTTCCGGATTGTAGTCTTGCATTTGATTTGGAAGACTTGTTGAGGGCATCTGCTGAAATTCTCGGGAAAGGATCGTTTGGAACGAGTTATAAGGCGGCTCTGGAAGATACGACCATAGTAGTGGTGAAGAGACTGAAAGAAGGGAATATTTCGAAACGGGAATTTGAAATACAGATGGAATTGGTCGGAAATATTAAGCACGAGAATGTTGATCCTCTCAGGGGGTATTACTATTCAAAGGAAGAGAAACTTATGGTATATGATTACCATGAACGAGGAAGCATATCCACAATGTTACATGGTCGAAGTGAGAGGGGGCGATCTCATCTAGACTGGGAAACCCGTATAAGAATTGCAATAGGTGCAGCTAAGGGCCTTGCTCATATCCATGGCAGGAAAATTTTCCATGGAAACATTAGGGCCTCTAACATTTTCCTAAACTCGGAAGGATACGGTTGCATTTCGGATATCGGTTTAGCAACATTGATAAATCCGATGGTTCCACCAGTAAAAGAGATCATCGTAGGGTACCGGGCACCAGAAATGACAGACATACGTAAGTCAACTCATAGCTCCGATGTATACAGTTTTGGTGTCTTGATACTAGAGCTTCTGACCGGTAAATCACCCGTAAATGTCAAGGGAGGGGATGAAGTTGTTCATTTGGTGAGGTGGGTGAACTCCGTGGTGAGAGAAGAGTGGACGGGAGAAGTGTTTGCTGTGGAGCTTTTGAGGTATCAGAATATAGAGGAAGAGATGGTGGAGATGTTGCAAGTGGGATTGGCATGTGTGGCGAAAATGCCGGAGCAAAGACCGAAAATGGTGGATGTAGTTTCAAGGATCGAGCAGGTTCGTCATGTTAGTCCTGGGAACCGATCTTGA 1839 44.54 MNKKTAGLLFIFYTVFFFVKFFSPVLTEPVEDKQALLNFLDNITHTRLLNWNQTTSVCRNWTGVFCNVEQSRVIAVRLPGAGLLGPIPANTLSRLSALQTLSLRLNALSGPFPPDFSKLGNLNSIYLQHNKLSGPLPPHFSVWKSLSVIDLSNNAFNGSIPSSLSNLTHLTALNLSRNSLLGELPDLNFPSLQQLDLSNNKLTGPMPRSLQRFPSWAFSGNNLTAENALPPALSLQQPTAQPSKRGVKISESAILGIVIGTCVAIFAIVAVLMIIFSSKRGNNEDEAKVEERAKRKEASGKKKRAASSEIKEKSNSITFFPDCSLAFDLEDLLRASAEILGKGSFGTSYKAALEDTTIVVVKRLKEGNISKREFEIQMELVGNIKHENVDPLRGYYYSKEEKLMVYDYHERGSISTMLHGRSERGRSHLDWETRIRIAIGAAKGLAHIHGRKIFHGNIRASNIFLNSEGYGCISDIGLATLINPMVPPVKEIIVGYRAPEMTDIRKSTHSSDVYSFGVLILELLTGKSPVNVKGGDEVVHLVRWVNSVVREEWTGEVFAVELLRYQNIEEEMVEMLQVGLACVAKMPEQRPKMVDVVSRIEQVRHVSPGNRS 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2816135 2818515 - Conep05aG0068200.1 Cone5ag0660 437678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0660 612 FunFam pollen receptor-like kinase 1 302 408 - -
Cone5ag0660 612 SUPERFAMILY L domain-like 42 216 - -
Cone5ag0660 612 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 409 611 - -
Cone5ag0660 612 Pfam Leucine Rich Repeat 98 119 IPR001611 GO:0005515(InterPro)
Cone5ag0660 612 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515(InterPro)
Cone5ag0660 612 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515(InterPro)
Cone5ag0660 612 Pfam Leucine Rich Repeat 121 141 IPR001611 GO:0005515(InterPro)
Cone5ag0660 612 Gene3D Phosphorylase Kinase; domain 1 298 408 - -
Cone5ag0660 612 Pfam Protein tyrosine and serine/threonine kinase 338 599 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0660 612 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0660 612 Gene3D Ribonuclease Inhibitor 31 141 IPR032675 -
Cone5ag0660 612 MobiDBLite consensus disorder prediction 285 307 - -
Cone5ag0660 612 Gene3D Ribonuclease Inhibitor 142 262 IPR032675 -
Cone5ag0660 612 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Cone5ag0660 612 SUPERFAMILY Protein kinase-like (PK-like) 337 601 IPR011009 -
Cone5ag0660 612 PANTHER OS05G0588300 PROTEIN 14 606 IPR050994 -
Cone5ag0660 612 Gene3D Transferase(Phosphotransferase) domain 1 410 609 - -
Cone5ag0660 612 FunFam Probable inactive receptor kinase RLK902 29 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0265 Cone-Chr12:1407746 Cone5ag0660 Cone-Chr5:2816135 2.27E-171 dispersed
Cone5ag0660 Cone-Chr5:2816135 Cone8ag0259 Cone-Chr8:1498559 1.14E-171 dispersed
Cone14ag0036 Cone-Chr14:262524 Cone5ag0660 Cone-Chr5:2816135 5.11E-181 wgd
Cone15ag0037 Cone-Chr15:259168 Cone5ag0660 Cone-Chr5:2816135 2.96E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82838 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0660 - - - 0.0