Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0661 ATGTCAATGCGGAGTGAAGAGAGAGGAATGGAGGACATATGGACTCTGTTTTGTGGTGACTGTTCCAACATTGATGGAGAGCCGCCATGTCGTCCTTCCACCTTTGATTTTCTATTCAATCCCTCTTCATGCATCACTCATGCATTGATCATATGCTTTGATCTCATCCTTTTCATCGCGCTCCTATTCACCATCTTCCACAAGTCCTCAACCAAAAAGACACTTCACCTCCCAATCCGGTTCCGTAGCTACTCGACTCTGCAAATACTATCCGGTTTCTTCAATGCCTGTCTCGGATTAACCTACTCGGCTTTAGCCGTCTTTTTCTTGTCAAGAAACCAGACTGCTCTGCCCTTACACTCATGGTTACCATTGCTCCTTCATGGATTAACATGGTTTTTCATGAGCCTGATCATTACTATTCGCGGCAAACAATTTACAAGGAGCTCACTTAGACTCTTCTCCATCATTGCCCTTGTTTTCTCTGCCGTTGTATGCTCCTTATCACTGTCCGGTTCGATTTCAAGCAAACTCGTTTCGATAAAGACGGCTTTAGATGCTCTATCATTTCCAGGAGCAACATTGCTCTTGTTTTGCACTTACAGAGGTCTTATACACGAGGGGGATGATCATGAGGGTATGAATGGAAATGACCTTTACACCCCATTGACTAGCGAGGCTAACGGAATTACTAGGACCGATGCGGTTACTCTGTTTTCCAAAGCCGGATTCTTTGCTAAAATGTCGTTCTGGTGGTTGAACTCTTTGATGAAAAGAGGCAGAGAGAAAACCTTAGAGGACGAAGATATTCCAAAGCTGAGAGAAGTAGATCGAGCCGGAAGTTGCTACTTACAGTTTGTCGAGCAGCTGAATAACCATAAACTAACCCAACCGAATTCTCAACCGTCAGTCTTAAATACCATAATCTTATGTCATTGGAAGGAGATTTTTGTTTCCGGGTTTTTCGCTTTGTTAAAGATTCTAACAGTTTCGGCCGGCCCTCTACTTCTTAACGCCTTTATTCTAGTTGCTGATGGAAATGAAAGCTTCAAAAATGAAGGCTATCTATTGGTTATCACCCTCTTCTTATCAAAGAGCATAGAATCTATATCGCAAAGACAATGGTATTTCCGAAGCCGGCTAATCGGTCTTAAAGTGAGATCGCTTCTAACGGCCGCCATTTACAAGAAACAACTAAGATTGTCAAGTGCGGCTCGGTTAGTTCACTCAGGTGGTGAGGTAATGAACTATGTCACGGTTGATGCTTATAGGATTGGAGAATTCCCGTTTTGGTTCCATCAAACTTGGACAACAAGTCTTCAACTCTGCATAGCCTTAGTGATTCTCTTTCGGGCTGTAGGGCTAGCTACAATAGCTGCATTGGTTGTTATAGTCCTTTGTGTTCTTTGCAACACCCCTCTTGCTAAGTTACAACACAAGTTTCAAACCAAGCTCATGGAAACTCAAGATGCGAGGCTAAAGGCATGCACGGAATCTCTAGTGAACATGAAGGTGTTGAAGTTATATGCGTGGGAAAAGCATTTCAAGAATGTGATAGAGAGTTTGAGGAGCCAGGAGTATAAGTGGTTGTCCGCTGTACAAATACGGAAAGCGTATAATGTATTTCTCTTTTGGTCATCACCCATTCTTGTCTCGGCTGCTACTTTTGGAGCTTGTTATTTTCTCAAAATTCCTCTACATGCTAACAATGTTTTCACCTTTGTGGCTACTTTAAGGCTTGTTCAAGATCCGGTCAGGTCTATCCCTGATGTGATTGGAGTGGTTATTCAAGCGAAGGTTTCTTTTTCGAGGATCGTGAAGTTCCTTGAGGCATCGGAATTGGAAACTGCAAATGTTAGGCGAAAGGATGACATCGATAATGTGAATGAGGTTATTTGTGTTAAGTCGGCTAGTTTTTCATGGGAAGAGAATTCTTCAAAGGCAACGCTTCAGAATATTGATTTAGTGATTCGACGAGGGGAGAAGGTGGCTATTTGCGGAGAAGTTGGCTCTGGAAAGTCAACTTTGCTGGCAGCAATTCTCGGAGAAGTTCCAAATGTTCTTGGAAATATTCAAGTTTATGGGAGGATTGCTTATGTTTCTCAAACAGCATGGATTCAAACAGGAACAATACAAGATAATATTTTATTTGGGTCCGAGATGGATAGTCAAAGATACCGAGAAACACTGGAAAGGTGTTCTTTGGTAAAGGACCTTGAGCTGTTTCCTTATGGCGATCAAACTGAAATAGGTGAGAGAGGAGTGAATCTAAGTGGTGGTCAAAAGCAACGAATTCAATTGGCCCGTGCTCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCGTTCAGTGCCGTTGATGCACATACTGCTTCGAGTTTATTCAACGAGTATGTAATGGAAGCACTTTCGGGGAAGACTGTTTTGCTTGTGACTCATCAAGTCGATTTCCTTCCTGCATTTGATTCTGTTCTGTTAATGTCAGATGGGGACATTGTAGAAGCAGCTTCTTACCACAAACTATTAGCATCAAGCAAAGAATTTAAGGACCTTGTGAATGCACACAAAGAGACAGCCGGGTCCGAAAGGATAGCAGATGTTGCTTCTACACAAAAAAGCCAACCCACGTCTACTAAGGAGATTCGGAAAACTTATGTAGAGAAAGAAAACAAAGCATCGAAAAAAGGCGATCAGTTGATTAAACTAGAGGAGAGAGAAATCGGAGACACGGGATTCAGGCCGTACATTCAGTATCTGAATCAGGACAAAGGGTTCTTGTTCTTCTCAATTGCCAGTCTGTCTCATCTTGCATTTGTCACTTGCCAGATTCTGCAAAACACTTGGATGGCTTCTAGTGTTGAGAATCCAAACATTAGTACATTGAAATTAATCGTGGTTTACTTGTTGATCGGAGTTCTTTCGACGTTTTTCTTGCTATCTAGGTCGCTTTCTGCGGTTACTTTGGGGCTTAGATCGTCAAAATCGTTATTTTCCCAGCTATTCACCTCCCTTTTCCGTGCACCAATGTCCTTCTACGACTCTACACCTCTCGGAAGAATACTTAGCCGAGTCTCATCGGATTTAAGTATTGTTGATCTGGACGTACCATTCAGTTTCATCTTTGCCGTTGGTGCGACCACAAACGCTTATGCTAGTCTCGGAGTGTTAGCCGTTGTTACATGGCAAGTGCTTTTTGTTTCCATTCCCATGGTTTACCTCGCAATTCGGTTACAGAGATACTACTTCTCATCTGCGAAAGAATTGATGCGAATTAATGGCACGACCAGGTCGTTGATCTCAAATCATCTAGCCGAGTCTGTAGCTGGATCAATGACGATAAGAGCCTTCGAAGAAGAGGAGCGGTTCTTTGTGAAAACTCTCGATCTCATTGACACGAATGCTAGTCCTTTCTTTCATAGTTTTTCAGCAAATGAATGGTTGATCCAGCGGCTAGAAATTCTCAGTGCAACCGTTCTTGCTGCGGCTGCTCTTTGCATGGTTTTGCTTCCTCCTGGCACCTTTAGCTCCGGATTTATCGGAATGGCGATTTCTTATGGACTTTCGTTAAACATGTCATTGGTATTTTCAATCCAAAACCAATGCACTCTGGCAAATTACATTATTTCTGTCGAAAGAGTAAACCAATACATGCATTTAACAAGTGAAGCTCCGGAAGTAATAGAAGACAATCGTCCGCCGAGCAACTGGCCGTCTATTGGCAAAGTGGAGATTCTCGACTTGCAGATAAGATACAGGGATAATGCCCCGCTCGTTCTCAGTGGACTAAGTTGCACCTTTGAAGGAGGACATAAGATTGGTATTGTGGGCCGGACCGGAAGCGGGAAGAGCACTCTCATCGGTGCTCTATTTCGACTAGTGGAGCCCGCAGGAGGAAAGATCATAGTCGATGGGATCGATATCTGTACAATAGGCCTTCATGATCTACGGTCACGATTCGGAGTTATACCTCAAGATCCTACCCTTTTCAGCGGAACTGTTCGATACAATTTAGATCCCTTGTCCCAACACTCCGATCCAGAAATATGGGAGGTACTTGGAAAATGTCAGCTTCTAGAGGCTGTTCGGGAAAAAGAAGGATTGTTGGACTCATTGGTCGTGGAAGATGGTTCCAACTGGAGCATGGGTCAAAGGCAGTTATTCTGTTTAGGACGAGCGTTATTGAGGAGAAGTCGAGTATTGGTCCTCGACGAAGCAACTGCATCGATCGATAATGCAACTGATATGATATTGCAGAAGACGATACGTGCGGAATTTGCGGATTGTACAGTTATTACAGTTGCTCATAGAATCCCAACTGTAATGGATTGTACTATGGTTCTTGCCATTAGTGATGGGAAAATAGTGGAGTATGATGAGCCCATGAAGTTGATGAAGACAGAAGGTTCACTGTTCGGACAGCTGGTTAAGGAATATTGGTCTCATTCTGATCAACTTTCTGAATCAATTTGA 4473 42.97 MSMRSEERGMEDIWTLFCGDCSNIDGEPPCRPSTFDFLFNPSSCITHALIICFDLILFIALLFTIFHKSSTKKTLHLPIRFRSYSTLQILSGFFNACLGLTYSALAVFFLSRNQTALPLHSWLPLLLHGLTWFFMSLIITIRGKQFTRSSLRLFSIIALVFSAVVCSLSLSGSISSKLVSIKTALDALSFPGATLLLFCTYRGLIHEGDDHEGMNGNDLYTPLTSEANGITRTDAVTLFSKAGFFAKMSFWWLNSLMKRGREKTLEDEDIPKLREVDRAGSCYLQFVEQLNNHKLTQPNSQPSVLNTIILCHWKEIFVSGFFALLKILTVSAGPLLLNAFILVADGNESFKNEGYLLVITLFLSKSIESISQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSSAARLVHSGGEVMNYVTVDAYRIGEFPFWFHQTWTTSLQLCIALVILFRAVGLATIAALVVIVLCVLCNTPLAKLQHKFQTKLMETQDARLKACTESLVNMKVLKLYAWEKHFKNVIESLRSQEYKWLSAVQIRKAYNVFLFWSSPILVSAATFGACYFLKIPLHANNVFTFVATLRLVQDPVRSIPDVIGVVIQAKVSFSRIVKFLEASELETANVRRKDDIDNVNEVICVKSASFSWEENSSKATLQNIDLVIRRGEKVAICGEVGSGKSTLLAAILGEVPNVLGNIQVYGRIAYVSQTAWIQTGTIQDNILFGSEMDSQRYRETLERCSLVKDLELFPYGDQTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTASSLFNEYVMEALSGKTVLLVTHQVDFLPAFDSVLLMSDGDIVEAASYHKLLASSKEFKDLVNAHKETAGSERIADVASTQKSQPTSTKEIRKTYVEKENKASKKGDQLIKLEEREIGDTGFRPYIQYLNQDKGFLFFSIASLSHLAFVTCQILQNTWMASSVENPNISTLKLIVVYLLIGVLSTFFLLSRSLSAVTLGLRSSKSLFSQLFTSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFSFIFAVGATTNAYASLGVLAVVTWQVLFVSIPMVYLAIRLQRYYFSSAKELMRINGTTRSLISNHLAESVAGSMTIRAFEEEERFFVKTLDLIDTNASPFFHSFSANEWLIQRLEILSATVLAAAALCMVLLPPGTFSSGFIGMAISYGLSLNMSLVFSIQNQCTLANYIISVERVNQYMHLTSEAPEVIEDNRPPSNWPSIGKVEILDLQIRYRDNAPLVLSGLSCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDICTIGLHDLRSRFGVIPQDPTLFSGTVRYNLDPLSQHSDPEIWEVLGKCQLLEAVREKEGLLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRVLVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKIVEYDEPMKLMKTEGSLFGQLVKEYWSHSDQLSESI 1490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2821233 2826863 + Conep05aG0068500.1 Cone5ag0661 437679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0661 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 855 IPR027417 -
Cone5ag0661 1490 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 237 1478 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone5ag0661 1490 FunFam ABC transporter C family member 3 1226 1478 - -
Cone5ag0661 1490 Pfam ABC transporter transmembrane region 941 1188 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone5ag0661 1490 Pfam ABC transporter transmembrane region 316 584 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone5ag0661 1490 Pfam ABC transporter 650 784 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone5ag0661 1490 Gene3D - 1226 1478 IPR027417 -
Cone5ag0661 1490 CDD ABC_6TM_ABCC_D2 925 1218 IPR044726 GO:0140359(InterPro)
Cone5ag0661 1490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1243 1477 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone5ag0661 1490 Gene3D ABC transporter type 1, transmembrane domain 891 1224 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone5ag0661 1490 Gene3D - 626 861 IPR027417 -
Cone5ag0661 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1233 1470 IPR027417 -
Cone5ag0661 1490 FunFam ABC transporter C family member 5 892 1224 - -
Cone5ag0661 1490 Pfam ABC transporter 1260 1408 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone5ag0661 1490 CDD ABCC_MRP_domain2 1241 1461 - -
Cone5ag0661 1490 CDD ABCC_MRP_domain1 632 831 - -
Cone5ag0661 1490 Gene3D ABC transporter type 1, transmembrane domain 306 613 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone5ag0661 1490 FunFam ABC transporter C family member 10 300 613 - -
Cone5ag0661 1490 CDD ABC_6TM_ABCC_D1 318 605 IPR044746 GO:0140359(InterPro)
Cone5ag0661 1490 FunFam ABC transporter C family member 10 616 868 - -
Cone5ag0661 1490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 634 855 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone5ag0661 1490 SUPERFAMILY ABC transporter transmembrane region 926 1226 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone5ag0661 1490 ProSitePatterns ABC transporters family signature. 757 771 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone5ag0661 1490 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 317 597 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone5ag0661 1490 SMART AAA_5 1269 1461 IPR003593 GO:0016887(InterPro)
Cone5ag0661 1490 SMART AAA_5 659 832 IPR003593 GO:0016887(InterPro)
Cone5ag0661 1490 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1206 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone5ag0661 1490 SUPERFAMILY ABC transporter transmembrane region 307 610 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0661 K05666 - - rcu:8277053 2169.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0112 Cone-Chr17:594551 Cone5ag0661 Cone-Chr5:2821233 0 dispersed
Cone5ag0661 Cone-Chr5:2821233 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone1ag0952 Cone-Chr1:54766348 Cone5ag0661 Cone-Chr5:2821233 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
Vvi16g863 . . . . . . . Bma14g01983 . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0661 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48