Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0663 ATGATTAAAGGCATAAGTGAGCAGCTTCAACCTTCTAACACATATTCCATGGTTGGGTTTAGAAGGCCTTCCTTCTCTGCGGGGTTGGTTATTGTCTTTCAGGCACTTGTTCTACGTCAAGTGGCCTGCAAAAACAAGTGTCCCCCTTCTTCTTGTGGGGATATTCCCATAAAAGACCCTTTCCGACTCAAAGACGATCCTCGACACTGTGGAGACACAAGGTACAACCTCTCATGCGAAAACAACCGGACAATCTTGTACATACAGTCCAGAAAGTACTTGGTCCGTTCCATAAACTATGATCATAATCACACAATCAGAGTTGTTGATGATACTATATTGAATTGGTTGGGTGCCTGCTCCTTTGTTCCTAATTATTCTTTGACAACTAACAACTTCCCGTATGGAATTGATCCATACGGGACTGGTCAAACGAAAAATAAATTCAGTCAAGGTTTCAGTAATGGTTTCAGTAATAGTTACGAGAACGATTATCAGATACTGTCAAGACCGATAATCTTCTTGAACTGTGCAAACCCAATAACCAAAATTTCTTCTTTCGATGTTGATGTCACTACATGCATGAATGCTGCTTATTCCAACTCTAGTTTATCTCTGTCTGGAGGATATTCTTATGTTAAGATTGGGAGCTTGAAAGCCTTGGAGCTTGAGATCTCTTGCCAAATAAACATGATGGCCATGACGTCGTGGCCGGTTAAAGATGATGAGATGAATATTTCTTACAAAGATATTCATGATATGTTGTTATATGGGTTTGAGCTTTCATGGCGTCACTCTTGCCATTTCTCCTATATGTTGGAGTATCCCGGATGTGCCCGTCTATGCAGCACTTTTCCTCGATCAGCTTTTCAATTTTGTGGTGACTGGTATTTTTTCCGTACTGAAAATAAAATGTATTCTCGTGTAGCTGTAGCTGCTGGACTATTGACAGCAGCAAAATTTGCCTTCGGCACTCCATTTGTGATTGCATTTTTGGTCTACAAATGGCGAAGACAGCATTTGTCATTGTATGATAACATTGAAGAGTATTTACAGAGCCAAAATAACCTCAACCCTATCAGGTACTCTTGCTCCGACCTTAAGAAGATGACTCAATCTTTCCAGCAAAAGTTAGGCGAAGGAGGATTTGGCTCTGTTTACAAAGGAAAGCTTAGAAGTGGAAGTCTTGTTGCAGTGAAGTTGTTGTCGAGCAAATCTAAATCTAATGGCCAAGACTTTATCAATGAAGTTGCTACCATAGGCAGGATCCATCATGTTAATGTTGTCCAACTTATTGGCTTCTGCGTTCAAGGATCAAAGCGTGCTCTTGTTTACGACTTCATGCCAAAAGGGTCTCTTGATAAATACATATTCTCTCCAGAAGGAAGAGTTGCTATAAGCTACGAGAAGATGTTTGAAATCTCTCTCGGAATTGCTCGTGGGATTGAGTATCTCCATCGAGGATGTGAGAAGCAAATTCTGCATTTTGATATCAAGCCTCATAACATTCTTCTAGATGAGAATTTCACCCCCAAAGTTTCAGATTTCGGGTTGGCTAGATTGTTTTCAGCAGATGAAAGCATTGTGAATTTAACTGCCGCAAGAGGAACACTAGGTTACATGGCTCCTGAGCTATGCTACAAAAACCTTGGAGGGGTCTCTCATAAAGCTGATGTCTATAGCTTTGGGATGTTACTGATGGAAATGGCAGGAAAAAGGAAGAATGTTAATAACTTCACGGAGCACTCAAGCCAAGTATTCTTCCCTTTATGGGCTTATGACCAATTCAAGAAAGGAAGAGACATTGAAATTGAAGATGCCACCGAAGAGGAGATTGGATTAACAAAGAAGATGATGATAGTGGCACTCTGGTGTATGCAAATGAGGCCTCGTAATCGTCCTCCAATGAATAGAGTCGTTGAAATGCTCGAGGGTGAGCTTGAAAGCTTACAAATGCCTCCCTACAAGCCTTTGGAATTTCCAGAAGAGATGCAGTCTGTTGAGGATATCGGAAAAAACACTGCTACATCATCTTCATCAATTCCATCAGATGATTGGTCCTCTGAATCTGTCAGTTTGATTTTGACTTCCAACTAA 2097 40.82 MIKGISEQLQPSNTYSMVGFRRPSFSAGLVIVFQALVLRQVACKNKCPPSSCGDIPIKDPFRLKDDPRHCGDTRYNLSCENNRTILYIQSRKYLVRSINYDHNHTIRVVDDTILNWLGACSFVPNYSLTTNNFPYGIDPYGTGQTKNKFSQGFSNGFSNSYENDYQILSRPIIFLNCANPITKISSFDVDVTTCMNAAYSNSSLSLSGGYSYVKIGSLKALELEISCQINMMAMTSWPVKDDEMNISYKDIHDMLLYGFELSWRHSCHFSYMLEYPGCARLCSTFPRSAFQFCGDWYFFRTENKMYSRVAVAAGLLTAAKFAFGTPFVIAFLVYKWRRQHLSLYDNIEEYLQSQNNLNPIRYSCSDLKKMTQSFQQKLGEGGFGSVYKGKLRSGSLVAVKLLSSKSKSNGQDFINEVATIGRIHHVNVVQLIGFCVQGSKRALVYDFMPKGSLDKYIFSPEGRVAISYEKMFEISLGIARGIEYLHRGCEKQILHFDIKPHNILLDENFTPKVSDFGLARLFSADESIVNLTAARGTLGYMAPELCYKNLGGVSHKADVYSFGMLLMEMAGKRKNVNNFTEHSSQVFFPLWAYDQFKKGRDIEIEDATEEEIGLTKKMMIVALWCMQMRPRNRPPMNRVVEMLEGELESLQMPPYKPLEFPEEMQSVEDIGKNTATSSSSIPSDDWSSESVSLILTSN 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2834063 2836501 - Conep05aG0068700.1 Cone5ag0663 437681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0663 698 FunFam PR5-like receptor kinase 448 655 - -
Cone5ag0663 698 Pfam Wall-associated receptor kinase galacturonan-binding 47 110 IPR025287 GO:0030247(InterPro)
Cone5ag0663 698 MobiDBLite consensus disorder prediction 669 698 - -
Cone5ag0663 698 Pfam Protein kinase domain 375 641 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0663 698 Gene3D Transferase(Phosphotransferase) domain 1 448 659 - -
Cone5ag0663 698 SUPERFAMILY Protein kinase-like (PK-like) 352 644 IPR011009 -
Cone5ag0663 698 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524(InterPro)
Cone5ag0663 698 ProSiteProfiles Protein kinase domain profile. 372 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0663 698 Gene3D Phosphorylase Kinase; domain 1 345 447 - -
Cone5ag0663 698 MobiDBLite consensus disorder prediction 663 698 - -
Cone5ag0663 698 FunFam serine/threonine-protein kinase PBS1-like 343 447 - -
Cone5ag0663 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0663 698 PANTHER RUST RESISTANCE KINASE LR10-RELATED 279 665 IPR045874 GO:0004672(InterPro)
Cone5ag0663 698 SMART serkin_6 372 643 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0948 Cone-Chr1:54756177 Cone5ag0663 Cone-Chr5:2834063 0 dispersed
Cone1ag0971 Cone-Chr1:54870379 Cone5ag0663 Cone-Chr5:2834063 1.24E-283 dispersed
Cone1ag0973 Cone-Chr1:54881788 Cone5ag0663 Cone-Chr5:2834063 4.28E-233 dispersed
Cone5ag0663 Cone-Chr5:2834063 Cone5ag0678 Cone-Chr5:2889866 1.11E-181 dispersed
Cone5ag0674 Cone-Chr5:2883247 Cone5ag0663 Cone-Chr5:2834063 5.18E-29 dispersed
Cone5ag0663 Cone-Chr5:2834063 Cone5ag0664 Cone-Chr5:2842273 3.69E-100 tandem
Cone1ag0947 Cone-Chr1:54753152 Cone5ag0663 Cone-Chr5:2834063 3.40E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82839 PF00069 Pkinase 5.20E-29 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0663 - - - 0.0