Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0664 ATGTTTATTTTGGTAGGAACTGGAGCTTCCCAAAATGAGTGCAGGTCAGGGTGTGGCAGCAACAATAGCGTGCATATCAAATTCCCTTTTCGACTGAAAGGCAGCCCCGGGCATTGTGGCTACCCGGGATTTGAACTGTCATGTCCCGGTACAAACCAAACAGCTCTAGAGCTTCCATTTCCAGTGAAATTCTTCATCAAGAACATTGATTACAAATATCAGACACTTGAAGTCTATGACCCAGAAAATTGTCTTCCAAGACAGATACAGAACTTCCTTAAGTTTTCATCATCTTCAGCATTCCAATTCCTAGAAGAACCGCTTCTTCAGAACTTAACTTTCTTTAGTTGTACCCCTTCAATAGAGAGAACAGGGTCTGGCTTTCTTATCTCATGTCTTAGTGATTCTACAAAGAAATTTTTTGCTGTTTCTGGAAATACCCTCGTCGGGAACTTGCGCCTTCTGGGTTGTACCAAGATCTACGACGTTTTCTCTGCTCCATGGGAGTTAGGACACCCAGGGGACATATTATATTTGAGTTGGTCTAAACCTAACTGTCGAAGCTGTGAAGCAGAGGGACAAAAATGTCGATTGAAGAACAACAGCACTCAAAGCGTTGAGACAGAATGTTTCCCTCCTCTGGTCAAGCCCAAGCCCCACAAAGGTTGGGTTGTAGGTTCCTTACTCGTCGTACTAGTAATGGGTGCATTATATCACACATATCTAACTGATAAAGCAGAGAAAGTAAATCGAGCAAGGATCAAAATGTTTTTGGAAGAATACAAAGCTCTCAAGCCCACCAGGTACTCCTATGCTGATATCAAAAGGATCACGAATCAACTCAAGGACAAGTTGGGCCAAGGAGCTTATGGAACCGTGTACAAAGGAAATCTTTCTGATGAAATTCAAGTTGCAGTTAAGATCCTCAACAACTCCAAGGGAAATGGTGAAGAGTTTATAAACGAAGTAGCAATAATTGGTCGAATCCACCATGTGAATGTTGTACGCTTGGTTGGCTTTTGTGCTGATGGCTTCAGACGAGCTCTTGTTTACGAGTTCTTAGAAAAAGGATCATTGAAGAATTATATATCTCCACAAGACAATCAGGTGCAGCCCCATTTTCTTTGTTTGGAGAAACTACAAGAAATAGCTATTGGAATAGCTAAAGGAATTGAGTATCTTCATCAAGGGTGTGATCAAAGAATCCTCCATTTTGATATCAAACCTCATAACATTCTTCTAGACCAAAACTTCACTCCGAAAATCTCAGATTTTGGTTTGGCCAAGCTGTGCTCCAAAGAACAAAGTATAGTGTCAATGACTACTGTAAAAGGGACAATGGGGTACATCGCTCCAGAAGTTTTCTCTAGAAACTTTGGCAGTGTGTCTTATAAGGCAGACGTGTATAGTTTCGGAATGTTGCTACTTGAAATGGTAGGAGAGAAAAAGAACATAAGTGCAATGGAAGAAGATGGTGGATATGTCGGGAATGAATCTTTAAGTGTCAAAAATAGGGAGCTTCAGATTCATGTTGGTGAAGAAGATGTTGATGGAGGTAAAATTGCGAAGAAACTTGGAACTGTGGGATTATGGTGTATTCAATGGCACCCAGCCGACCGTCCTTCCATGAAGGTGGTGCTTCAGATGTTGGAAGGAGATGACGATAAGTTAACTTTGCCTCCTATTCCTTTTACCTGTACAGGTCCAACCACAACAAAGGGCAGAAAACACAATCTGGAGTTAGAAATTATCCCCGAAATAGAATGA 1767 41.37 MFILVGTGASQNECRSGCGSNNSVHIKFPFRLKGSPGHCGYPGFELSCPGTNQTALELPFPVKFFIKNIDYKYQTLEVYDPENCLPRQIQNFLKFSSSSAFQFLEEPLLQNLTFFSCTPSIERTGSGFLISCLSDSTKKFFAVSGNTLVGNLRLLGCTKIYDVFSAPWELGHPGDILYLSWSKPNCRSCEAEGQKCRLKNNSTQSVETECFPPLVKPKPHKGWVVGSLLVVLVMGALYHTYLTDKAEKVNRARIKMFLEEYKALKPTRYSYADIKRITNQLKDKLGQGAYGTVYKGNLSDEIQVAVKILNNSKGNGEEFINEVAIIGRIHHVNVVRLVGFCADGFRRALVYEFLEKGSLKNYISPQDNQVQPHFLCLEKLQEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDQNFTPKISDFGLAKLCSKEQSIVSMTTVKGTMGYIAPEVFSRNFGSVSYKADVYSFGMLLLEMVGEKKNISAMEEDGGYVGNESLSVKNRELQIHVGEEDVDGGKIAKKLGTVGLWCIQWHPADRPSMKVVLQMLEGDDDKLTLPPIPFTCTGPTTTKGRKHNLELEIIPEIE 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2842273 2844270 + Conep05aG0068800.1 Cone5ag0664 437682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0664 588 ProSiteProfiles Protein kinase domain profile. 279 557 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0664 588 Pfam Protein kinase domain 281 548 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0664 588 SMART serkin_6 279 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0664 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0664 588 FunFam PR5-like receptor kinase 354 561 - -
Cone5ag0664 588 SUPERFAMILY Protein kinase-like (PK-like) 261 551 IPR011009 -
Cone5ag0664 588 Gene3D Transferase(Phosphotransferase) domain 1 354 558 - -
Cone5ag0664 588 Gene3D Phosphorylase Kinase; domain 1 254 353 - -
Cone5ag0664 588 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524(InterPro)
Cone5ag0664 588 PANTHER RUST RESISTANCE KINASE LR10-RELATED 211 567 IPR045874 GO:0004672(InterPro)
Cone5ag0664 588 FunFam serine/threonine-protein kinase PBS1-like 247 353 - -
Cone5ag0664 588 Pfam Wall-associated receptor kinase galacturonan-binding 14 80 IPR025287 GO:0030247(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0947 Cone-Chr1:54753152 Cone5ag0664 Cone-Chr5:2842273 0 dispersed
Cone1ag0972 Cone-Chr1:54878381 Cone5ag0664 Cone-Chr5:2842273 2.24E-273 dispersed
Cone5ag0664 Cone-Chr5:2842273 Cone5ag0677 Cone-Chr5:2887724 9.09E-188 dispersed
Cone5ag0663 Cone-Chr5:2834063 Cone5ag0664 Cone-Chr5:2842273 3.69E-100 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82840 PF00069 Pkinase 5.30E-29 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0664 - - - 0.0