Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0665 ATGATTCCTTTCGATACAACCAAAACGCCGCGTCACTCTCTCCCCCTCTCTCTCTCTCACTCACTCACATTGGAAATTCCACCAAACAGTAGCAGCGATTTCTTCAACCAGTTAATTTTCAGCTACGACTTTCTCGCTCACATCGCCTCTCACTTATACCCCGACGAAACCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTACACGCACATTGTTTACTCTCTCTCGCTCTCTTTCTCCTTTCTCTGCTAGTGAAATGGCGCAGGTGGTGGCTACAAGGACGATCCAGAGCACGTTCCTGTGCCCTAGCACGGGATCCGTACGAGAGGGAGTGGACAAGCTCAGGCCTCCTAGCTTCGCTTCTAAGGTGCTAGGCGCCGTCGAGGAGAAGAAGAACGCTGACATCGTTTTCGGAAGGTCTCGAATCACTGCGATAAGAGCCGCTCAAGCTGAGGTGCTTCCAGTTACGCCGGAGGATGCTCCTGAGATAGCAAAAAGATTTCAGAATTTACGAGCAACTCAACAACACGGTGACACATCCGTCGGTATGTGGTCAAAGCCAACAGTTAGACGAAAGACAAAAATTGTTTGCACGATTGGTCCTTCCACCAACACAAGGGAAATGATATGGAAACTAGCAGAGGCTGGAATGAATGTTGCCCGAATGAATATGTCTCATGGAGACCATGCTTCTCATCAGAAAGTTATTGATTTGGTGAAAGAATACAATGCACAATCCAAAGATTATGCTATTGCAATCATGCTCGACACCAAGGGTCCAGAGGTTAGGAGCGGTGATCTTCCACAACCAATCATGTTATCAAGTGGACAGGAATTCACCTTTACAATTCGTCGGGGTGTTGGTACTGCCGACTGTGTCAGTGTAAACTATGATGATTTTGTTAATGATGTAGAAGCGGGTGACATGCTCCTGGTTGATGGTGGTATGATGTCATTGGTTGTGAAATCCAAGACAGAAGATTCAGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCTCGACGACATTTAAATGTACGAGGAAAAAGTGCTACACTGCCTTCAATTACTGAGAAGGACTGGGATGACATAAAATTTGGAGTTGACAACAAAGTTGACTTCTATGCTGTTTCTTTTGTTAAAGATGCTGAAGTAGTTCACGAATTGAAGAATTATCTACAAAACTCTGGTGCTGATATACATGTAATTGTAAAGATTGAAAGTGCAGATTCTATTCCAAATTTGCATTCAATTATCACAGCATCTGATGGGGCAATGGTTGCCAGGGGAGATCTTGGTGCAGAGCTTCCTATTGAAGAAGTTCCACTTTTGCAGGAGAAGATAATCAATATGTGCCGTAGCATGGGAAAGGCTGTTATTGTTGCAACAAATATGTTAGAGAGCATGATCGTTCATCCAACCCCAACCAGAGCAGAAGTATCTGATATTGCTATTGCAGTTAGAGAGGGTTCTGATGCAATTATGCTTTCTGGAGAAACTGCTCACGGAAAGTTCCCCTTGAAAGCTGTGAAAGTCATGCACACAGTTGCATTACGTACTGAAGCAACCATATTAGGTGGGGATATGCCACCGAATCTTGGACAAGCCTTCAAGAACCACATGAGCGAGATGTTTGCTTACCATGCAACAATGATGTCTAATACTCTTGGAACCTCAACAGTTGTGTTTACTAGAACTGGTTTGACGGCTATCTTACTTAGTCATTATCGACCAACTGGCACCATTTATGCCTTCACAAATGATAAGCGAGTACAACAGAGACTGGCTTTATATCAAGGAGTGTGCCCCATTTACATAGATTTCTCAGAGGATGCTGAACAGACCTTCTCTGGCGCCTTGGCTCTATTAAAGAAGCAAGGGATGGTGAAGGAAGGAGAAGAGATAGCACTTCTTCAGAGTGGTAGACAACCCATTTGGCGGTCCCCGTCTACCCACAATATTCAAGTCCGGAAAGTGTAG 1989 44.6 MIPFDTTKTPRHSLPLSLSHSLTLEIPPNSSSDFFNQLIFSYDFLAHIASHLYPDETSLSLSLSLSLSRTRTLFTLSRSLSPFSASEMAQVVATRTIQSTFLCPSTGSVREGVDKLRPPSFASKVLGAVEEKKNADIVFGRSRITAIRAAQAEVLPVTPEDAPEIAKRFQNLRATQQHGDTSVGMWSKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARMNMSHGDHASHQKVIDLVKEYNAQSKDYAIAIMLDTKGPEVRSGDLPQPIMLSSGQEFTFTIRRGVGTADCVSVNYDDFVNDVEAGDMLLVDGGMMSLVVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAEVVHELKNYLQNSGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEKIINMCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDAIMLSGETAHGKFPLKAVKVMHTVALRTEATILGGDMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSTVVFTRTGLTAILLSHYRPTGTIYAFTNDKRVQQRLALYQGVCPIYIDFSEDAEQTFSGALALLKKQGMVKEGEEIALLQSGRQPIWRSPSTHNIQVRKV 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2844580 2849267 - Conep05aG0068900.1 Cone5ag0665 437683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0665 662 FunFam Pyruvate kinase 524 643 - -
Cone5ag0665 662 Gene3D - 195 520 IPR040442 -
Cone5ag0665 662 Gene3D - 263 356 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Cone5ag0665 662 Gene3D - 535 662 IPR036918 -
Cone5ag0665 662 SUPERFAMILY PK beta-barrel domain-like 262 353 IPR011037 -
Cone5ag0665 662 FunFam Pyruvate kinase 358 523 - -
Cone5ag0665 662 Pfam Pyruvate kinase, barrel domain 193 513 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cone5ag0665 662 Pfam Pyruvate kinase, alpha/beta domain 549 642 IPR015795 -
Cone5ag0665 662 SUPERFAMILY PK C-terminal domain-like 511 662 IPR036918 -
Cone5ag0665 662 PANTHER PYRUVATE KINASE 187 642 IPR001697 GO:0000287(InterPro)|GO:0004743(PANTHER)|GO:0004743(InterPro)|GO:0005737(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Cone5ag0665 662 NCBIfam pyruvate kinase 193 661 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cone5ag0665 662 ProSitePatterns Pyruvate kinase active site signature. 403 415 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Cone5ag0665 662 FunFam Pyruvate kinase 263 356 - -
Cone5ag0665 662 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 184 527 IPR015813 GO:0003824(InterPro)
Cone5ag0665 662 PRINTS Pyruvate kinase family signature 251 267 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cone5ag0665 662 PRINTS Pyruvate kinase family signature 501 517 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cone5ag0665 662 PRINTS Pyruvate kinase family signature 432 456 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cone5ag0665 662 PRINTS Pyruvate kinase family signature 482 500 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cone5ag0665 662 PRINTS Pyruvate kinase family signature 375 389 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cone5ag0665 662 PRINTS Pyruvate kinase family signature 405 431 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cone5ag0665 662 PRINTS Pyruvate kinase family signature 457 481 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0665 K00873 - - cit:102618099 958.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0665 Cone-Chr5:2844580 Cone8ag0456 Cone-Chr8:2915967 1.96E-261 dispersed
Cone1ag0946 Cone-Chr1:54748288 Cone5ag0665 Cone-Chr5:2844580 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72