Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0671 ATGGTACCCATCAGTATCTTAAGAAGTGCCATTGCTCAAGCTGGACCTATAGGAATATTCTTCAAAAGACGGGTTCATTTCTGCAATATATTGAGGAGCTTGCCTGCAGGTCTAGGCTTAACATACTGGTCTAAACAGGAATTCAAGACAAATTTAAGTATGATGAATGATTCAGGCTCCACTGTAAAAGGTAGTGCTATAACTGGTATTTTGACAGAGAAAGACGAGTCCAGCGGATATTCTAGTGGCGGGTGGAAAAGTGAAAATGCAAAACTTAGCTGCGGGTTTTGCAGTTTTAGAGGGAAGAGACCGACCATGGAGGATTTTTATGATGTTAAAATGTCCGAGATTGATGGACAAAGAGTCTGCCTGTTTGGCATATTTGATGGTCATGGTGGATCTCGTGCGGCTGAGTATTTGAAGGAGCATCTATTTGAGAATCTCATGAAACATCCACAGTTTATGACGGACACTAAATTAGCGATCAGTGAAACATATCAACAGACGGATACTGAATTTTTGGATTCTGAAAGAACCAATTACCGAGATGATGGCTCTACTGCTTCAACGGCAGTGTTGGTTGGTAATCATCTATATGTTGCCAATGTTGGAGATTCACGCACAGTGATATCAAAGAGTGGCAAAGCGATCCCTCTTTCCGAGGATCATAAACCAAATAGGACTGATGAGCGGAAGAGAATTGAAAATGCAGGGGGTATTGTGATGTGGGCAGGCACTTGGAGGGTTGGAGGCATTCTAGCTATGTCTCGGGCTTTCGGTAACCGGATGCTGAAGCAATTTGTTGTGGCAGACCCAGAGATTAAGGAGCAAGAGATAGATGAGGAGTTTGAGTTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGCTGTAAACAATGAGGACGCAATATCACTCGCCAGAGAAGAAGAACCCGAGGCTGCAGCTAGGAAGCTAACTGAAGCTGCATTTACACGCGGCAGTGGTGACAACATAACATGTGTTGTTGTGAGGTTCCACCACCACCACGACGGCAAAGTGGACCCCCCCTCCCAGACTTCAAAATTACAAGAAAGTTAA 1077 44.2 MVPISILRSAIAQAGPIGIFFKRRVHFCNILRSLPAGLGLTYWSKQEFKTNLSMMNDSGSTVKGSAITGILTEKDESSGYSSGGWKSENAKLSCGFCSFRGKRPTMEDFYDVKMSEIDGQRVCLFGIFDGHGGSRAAEYLKEHLFENLMKHPQFMTDTKLAISETYQQTDTEFLDSERTNYRDDGSTASTAVLVGNHLYVANVGDSRTVISKSGKAIPLSEDHKPNRTDERKRIENAGGIVMWAGTWRVGGILAMSRAFGNRMLKQFVVADPEIKEQEIDEEFELLVLASDGLWDAVNNEDAISLAREEEPEAAARKLTEAAFTRGSGDNITCVVVRFHHHHDGKVDPPSQTSKLQES 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2870663 2873827 - Conep05aG0069500.1 Cone5ag0671 437689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0671 358 FunFam Probable protein phosphatase 2C 76 85 344 - -
Cone5ag0671 358 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
Cone5ag0671 358 PANTHER PROTEIN PHOSPHATASE 85 337 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone5ag0671 358 ProSiteProfiles PPM-type phosphatase domain profile. 93 338 IPR001932 -
Cone5ag0671 358 SMART PP2C_4 83 336 IPR001932 -
Cone5ag0671 358 CDD PP2Cc 93 338 IPR001932 -
Cone5ag0671 358 Pfam Protein phosphatase 2C 94 331 IPR001932 -
Cone5ag0671 358 SMART PP2C_SIG_2 81 338 IPR001932 -
Cone5ag0671 358 Gene3D - 84 346 IPR036457 -
Cone5ag0671 358 SUPERFAMILY PP2C-like 86 340 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0671 Cone-Chr5:2870663 Cone7ag1645 Cone-Chr7:11098796 1.03E-113 dispersed
Cone1ag0964 Cone-Chr1:54855567 Cone5ag0671 Cone-Chr5:2870663 1.14E-234 wgd
Cone14ag0026 Cone-Chr14:216001 Cone5ag0671 Cone-Chr5:2870663 1.74E-77 wgd
Cone15ag0028 Cone-Chr15:207232 Cone5ag0671 Cone-Chr5:2870663 2.35E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0671 K17506 - vvi:100262129 504.982