Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0677 ATGAGGAGCAGGGTCAGAATGATGGATATTTCTTTTCTCGTCTTTCTTTTATGCTTCCTCTTAGTTGTAGTAAATACAGCTAAGACTCAACCACACCACCTAGATGAAGAATGCAAGCCCAGAAGCTGCAATTCCAAAGCCCCTTCCGTTCAATTCCCTTTCTGGCTTAACAATCATCAATCTCAACGCTGTGGATTTCCCGGGTTTAGGCTATCGTGTAACAACAACAATCAGACCGAGCTCGAAATTCCACGATCAGTAAGGTTGACCGTAGATCGTATCGATTACAAGAGACAGCAAATTCATGTTCATGATGCAGAAAATTGCCTCACAAATCAGATCAAAAGCCACAACATATCGTCAACCCCTTACCTTTTTCAACAGTATCCATATAGTTACACTTTGTTTAACTGTTCATCAACTAGCATTGAAAATTTAGTCCCCTGCTTAAGCGGTCCGGGCTTTCAAGTTCGAGCTGTTGAGTCCGACAACATGATTTATATGTCTCCCTTGTTGTCTTGTAAGAAGGTTCATGATATAGCACTAATTCCTGTGGAAATTGTATCTGGTCAGAGAAATAGTCTTGTTTTAAATTGGATAAATCCGAAATGTGGTCAATGCTCAAGAGAAGGAAAAGAATGTAGATTGAAGAGATATGGCACGATGACTCAAGCTGAATGCTATCATAAGCCCAAACAAGGTGTATCAAAAGTATTGATTATAGGTGTCCCAGTAGGTTCATTTCTGTCTGTACTACTTGCTACCGGAATCTATTTTGCAGTTCGGGTTCGTAATTTAGACCAAAGAGAAAAGGAAAATCAAGTCAGGATCGAGAAGTTTTTAGAGGATTATAAGGCCTTAAGGCCGACTAGATATTCATATGCAGATATCAAGAGGATTACAAATCAGTTCAAGAAGAAGTTAGGCCAAGGAGCCTATGGTACAGTGTTCAAAGGAAAGCTTTCAGATGATGTCTTTGTAGCAGCTAAGATTCTAAATTATTCAGCAGGAGATGGTGAAGAGTTCATCAATGAAGTCAGATCCATGGGAACGATTCACCATGTCAATGTGACTAGACTAGTCGGTTTTTGTGCTGATGGAATGAAACGAGCTCTTGTTTATGAGTTCTTACCAAACAATTCGCTTGAAAAGTACATCTTTTCGGCAGATGGAAAAAGGGATGTTCTTGGTTGGGAGAAGCTTCAAGATATCGCTCTAGGAATAGCTAAAGGGATCGAATATCTTCATCAAGGGTGTGATCAACGGATCCTCCATTTTGATATTAAACCGCATAACATCTTACTAGACCACAACTACAATCCAAAAATCTCGGATTTTGGTCAGGCCAAGTTGTGTTCTAAGGAACAAAGTGCGGTTTCTATGACTGCTGCAAGAGGGACCATGGGTTATATCGCACCAGAAGTGCTATCAAGGAATTTTGGTAATGTCTCGTGCAAATCAGATGTATATAGTTACGGAATGCTATTGCTTGAAATTGTTGGAGGCAGGAAAAATGTGGATGATAAGGCGGAGGGTGCTAGCCAAATATACTTTCCGGAATGGATATATAAACAATTAATGGATCAAGGAGAGGATTTAGGAATTGGAATTCAAGAAGAGAGTCATGGAAAGATAGCCAGAAAACTAGCCGTCATTGGACTTTATTGCATCCAATGGTATCCAGTAGAACGACCTTCAATGAGTACTGTGGTTCAAATGTTGAAAGGTGAAGGAGAGAGTCTGACGATTCCGCCTAATCCTTTTGCATCTACAGATGCAGTGAGGACTGCAAATAATCCCAGTCGAAATTTTCAGTCTGAACTGGAAACCATCCCTGAATCAGGTTAA 1848 40.21 MRSRVRMMDISFLVFLLCFLLVVVNTAKTQPHHLDEECKPRSCNSKAPSVQFPFWLNNHQSQRCGFPGFRLSCNNNNQTELEIPRSVRLTVDRIDYKRQQIHVHDAENCLTNQIKSHNISSTPYLFQQYPYSYTLFNCSSTSIENLVPCLSGPGFQVRAVESDNMIYMSPLLSCKKVHDIALIPVEIVSGQRNSLVLNWINPKCGQCSREGKECRLKRYGTMTQAECYHKPKQGVSKVLIIGVPVGSFLSVLLATGIYFAVRVRNLDQREKENQVRIEKFLEDYKALRPTRYSYADIKRITNQFKKKLGQGAYGTVFKGKLSDDVFVAAKILNYSAGDGEEFINEVRSMGTIHHVNVTRLVGFCADGMKRALVYEFLPNNSLEKYIFSADGKRDVLGWEKLQDIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNYNPKISDFGQAKLCSKEQSAVSMTAARGTMGYIAPEVLSRNFGNVSCKSDVYSYGMLLLEIVGGRKNVDDKAEGASQIYFPEWIYKQLMDQGEDLGIGIQEESHGKIARKLAVIGLYCIQWYPVERPSMSTVVQMLKGEGESLTIPPNPFASTDAVRTANNPSRNFQSELETIPESG 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2887724 2889794 + Conep05aG0070100.1 Cone5ag0677 437695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0677 615 Gene3D Transferase(Phosphotransferase) domain 1 377 582 - -
Cone5ag0677 615 FunFam PR5-like receptor kinase 377 585 - -
Cone5ag0677 615 Gene3D Phosphorylase Kinase; domain 1 268 376 - -
Cone5ag0677 615 SMART serkin_6 302 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0677 615 MobiDBLite consensus disorder prediction 596 615 - -
Cone5ag0677 615 SUPERFAMILY Protein kinase-like (PK-like) 286 574 IPR011009 -
Cone5ag0677 615 Pfam Protein kinase domain 304 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0677 615 FunFam serine/threonine-protein kinase PBS1-like 268 376 - -
Cone5ag0677 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 199 594 IPR045874 GO:0004672(InterPro)
Cone5ag0677 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0677 615 Pfam Wall-associated receptor kinase galacturonan-binding 38 105 IPR025287 GO:0030247(InterPro)
Cone5ag0677 615 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0677 615 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0664 Cone-Chr5:2842273 Cone5ag0677 Cone-Chr5:2887724 9.09E-188 dispersed
Cone5ag0677 Cone-Chr5:2887724 Cone5ag0905 Cone-Chr5:3880989 1.85E-72 dispersed
Cone5ag0676 Cone-Chr5:2885462 Cone5ag0677 Cone-Chr5:2887724 1.87E-73 tandem
Cone5ag0677 Cone-Chr5:2887724 Cone5ag0678 Cone-Chr5:2889866 9.59E-120 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82843 PF05018 DUF667 1.10E-85 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0677 - - - 0.0