Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0678 ATGATCTCCTTCTCTTCTCTCTCTACAATGCCGAGACAGAGACTCTGTTTCCCTCTTCTGAATTCCTTTGTTCTAGTTATATTCCTTGAAGCCACTTTCATCAAAGCTAAAACCCCGAAATGCACTCCTTCTTGTGGAAATATACGCAATATCTCCTACCCTTTCCGATTGCAAGGAGATCCTGCGGATTGTGGTGACCAAAATCATGAACTACTCTGCGAAAACAATCGCACCCTTCTCTACCTCGAATCTTCCAAGTACCATGTCCAAAGCATTTCCTATGAAAATCACACCATCCAAGTGTTCGACGAAAGTCTTGACCGAAATAATTGCTCCATTCCTTACAAATCCTTGTATCTGCCATACGACCAACGTTTACCTTATGCAAATAATCCTTGTGTCGTGTATTTTATGAGTTGTCCAACGTCTCTAAACTCTTCAATCTATGTTGATGCCTCTTCTTGCATTAATGGTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCAAGGAAGCACTTTTATGTTTTGTATGGAGATACAACGGTGGGGGATTTTCCGGAGCTGTGCAGCATTGAGGCTTATGTTCCGATTCGAATTTGTAATATTACGGGCATGTCTTCATTGGATATTTACAGGGAATTGCTATTTGGGTTTGAATTGGGGTGGTTTGTTGAAGCCACTAGTCCTACATCCTTTGAGAGGATTCAAGATTTTTTTCGCAGTCTCGCATCATATTGGATTCTTGTTCCGGTAGTAATTGGAGGAATCGTCTTTGGAAGAGCTGTATTATTTGGGCCACCATTATTGGTTGGGATCATAATATACAAATTCAGGCAGAGACACCGTTCAGTGGATGATACGGTTGAGGAGTACCTTGAAAGCCAGAACAACTTCATGCCCATAAGGTACTCCTATTTCCAAATAAAGAAAATGACCCAAGGTTTCAAAGAAAAATTAGGTCAAGGAGGCTACGGAACAGTATATAAAGGAAAGCTTCAAAGTGGTCATTTCGTAGCAGTAAAGTTATTGGGAAAATCAAAGGCCAACGGACAGGATTTCATGAATGAAGTTGCTACTATAGGGAGGGTTCATCATGTTAATGTTGTCCGACTTGTTGGATTTTGTGCAGAAGGCTCAAAACGAGCTCTTGTATTTGATTTCATGGCAAAAGGGTCTCTAGACAAGTACTTATTTTTGGATGGAGAAAGTAGCATTACCTTGAACTGGACGAAACTGCATGAAATTTCACTTGGAGTGGCTAAGGGGATTGAATATTTACATCAAGGTTGTGACATGCAAATTCTACACTTTGATATTAAGCCCCATAACATACTTCTAGACGAAAACTTTACCCCTAAAGTTTCCGATTTCGGCCTGGCAAAATTGTACCCTGTAGATGATAGCATTGTATCTCTAACTGCAGCAAGAGGAACTCTTGGATATATTGCTCCTGAATTGTTCTATAAAAACATTGGAGGGATCTCATATAAGGCTGATGTTTATAGCTTCGGAATGCTGTTGATGGAAATGGTAGGAAGGAGAAAGAATTTCAATGCAAAAGCAGAGCAGTCAAGCCAGAAGTACTTTCCATCGTGGATTTATGACCGGTTTTGCCAAGGAGAGGATACGGAGTTGGTAGATGCAGAGGGGAGTGAAAAGGAGACTGTAAAGAAGATGGCCATTGTTGCCTTATGGTGTATACAGATGAAACCAAGCGATCGTCCTTCAATGAGAAAAGTGTTGGAGATGTTAGAAGGAAAGATTGAGGTTCTAGAAATACCACCCGAACCATTTAAAGGACAAATACCAAATCAGGTTAGGGAAAGTAATCTAGCAGAGATACCGAACCATGCATCTAAAGGGTCGATGTCATTTACCTTGGAAGGGAGATAG 1896 40.61 MISFSSLSTMPRQRLCFPLLNSFVLVIFLEATFIKAKTPKCTPSCGNIRNISYPFRLQGDPADCGDQNHELLCENNRTLLYLESSKYHVQSISYENHTIQVFDESLDRNNCSIPYKSLYLPYDQRLPYANNPCVVYFMSCPTSLNSSIYVDASSCINGSSSSSSSSSSSSRKHFYVLYGDTTVGDFPELCSIEAYVPIRICNITGMSSLDIYRELLFGFELGWFVEATSPTSFERIQDFFRSLASYWILVPVVIGGIVFGRAVLFGPPLLVGIIIYKFRQRHRSVDDTVEEYLESQNNFMPIRYSYFQIKKMTQGFKEKLGQGGYGTVYKGKLQSGHFVAVKLLGKSKANGQDFMNEVATIGRVHHVNVVRLVGFCAEGSKRALVFDFMAKGSLDKYLFLDGESSITLNWTKLHEISLGVAKGIEYLHQGCDMQILHFDIKPHNILLDENFTPKVSDFGLAKLYPVDDSIVSLTAARGTLGYIAPELFYKNIGGISYKADVYSFGMLLMEMVGRRKNFNAKAEQSSQKYFPSWIYDRFCQGEDTELVDAEGSEKETVKKMAIVALWCIQMKPSDRPSMRKVLEMLEGKIEVLEIPPEPFKGQIPNQVRESNLAEIPNHASKGSMSFTLEGR 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2889866 2892562 - Conep05aG0070200.1 Cone5ag0678 437696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0678 631 Gene3D Phosphorylase Kinase; domain 1 276 388 - -
Cone5ag0678 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 174 605 IPR045874 GO:0004672(InterPro)
Cone5ag0678 631 ProSiteProfiles Protein kinase domain profile. 314 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0678 631 FunFam serine/threonine-protein kinase PBS1-like 282 388 - -
Cone5ag0678 631 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Cone5ag0678 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0678 631 Pfam Wall-associated receptor kinase galacturonan-binding 41 103 IPR025287 GO:0030247(InterPro)
Cone5ag0678 631 CDD STKc_IRAK 320 587 - -
Cone5ag0678 631 SMART serkin_6 316 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0678 631 FunFam PR5-like receptor kinase 389 597 - -
Cone5ag0678 631 Pfam Protein kinase domain 317 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0678 631 Gene3D Transferase(Phosphotransferase) domain 1 389 593 - -
Cone5ag0678 631 SUPERFAMILY Protein kinase-like (PK-like) 292 586 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0189 Cone-Chr11:924018 Cone5ag0678 Cone-Chr5:2889866 1.77E-90 dispersed
Cone18ag1295 Cone-Chr18:9050968 Cone5ag0678 Cone-Chr5:2889866 4.13E-70 dispersed
Cone5ag0663 Cone-Chr5:2834063 Cone5ag0678 Cone-Chr5:2889866 1.11E-181 dispersed
Cone5ag0675 Cone-Chr5:2883943 Cone5ag0678 Cone-Chr5:2889866 4.50E-91 dispersed
Cone5ag0676 Cone-Chr5:2885462 Cone5ag0678 Cone-Chr5:2889866 9.04E-63 dispersed
Cone5ag0678 Cone-Chr5:2889866 Cone7ag1698 Cone-Chr7:11318915 1.51E-76 dispersed
Cone5ag0677 Cone-Chr5:2887724 Cone5ag0678 Cone-Chr5:2889866 9.59E-120 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82844 PF05018 DUF667 5.90E-55 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0678 - - - 0.0