Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag0680 | ATGTCGTCGACGCTGCTGGAGGTAACACGTGCGGGCCACGAGGAGGTGGAGCGGCTCGAGCGGCTGGTTGTCAAGGAGCTCCAGAACGAGCCGGCTAACAGTAAGGACCGCTTGCTTCAGAGCCATAGAGTTCGGAACATGATCGACTCCATTACTTCCACCACTGAGAAACTGGTTGAGATTTATGAAGATAAAGATATTGCTAGGAAGGATGAGATTGCTGCTCTTGGAGGTCAAACTGCTACTGGAACCAATGTTTTTAGTGCTTTCTATGATAGATTGAAAGAGATTCGTGAGTACCATAGAAGGAATCCAGCTGCACGCGTTGTTGAAGCAAATGAGGACTTTGAGATGGTACTTAAGGAGGAACCAGTGATTGAGTTCAGTGGAGAGGAGGCATATGGACGATATCTTGACCTGCATGAGTTGTACAACCAATATATTAATTCTAAATTTGGAGAGCCAATTGAGTATGCTGCTTACCTTGATATTTTCTCACAACCACAGAAGATTCCTCGCAAACTGAAGTTGACAAGGCAATACAGGGAATACTTGGAAAATGTACTTGAGTATCTAATATATTTTTTCCAACGGACAGAGCCTTTACAAGATCTTGATAGAATATTCTCTAAGGTTGAAACTGAATTTGAAGAGCGATGGACAAATGGAGTGGTTGAAGGTTGGGAGAATGCCAATCAACAAAATGGACATGTTCCTTCAGCGCATGCTGTTATTGATCTCGATTATTATAGCACACTTGAAGAGCTGATAGAACTAGGCCCTGAAAAGTTAAAAGAGGCACTAGCTGCTTTAGGACTGAAATCTGGTGGGACGGTTCAGCAGCGGGCAGAGAGGCTTTTCCTTACGAAGCATACACCTCTTCAAATGTTGGACAGGAAGCATTTTGCTAAAGTTCTGCATGGGGCAGATCGAAATGGGGCTGATGCAGCTCCACAGCAGGATGGAAATTTGAAAGAAGTTGCCTTGTCGGAAGCGAAAATGGAAAAACTATGTGATTTCTTGCAAGAGACAATCACACACACAAAAGACAATGTTGTGAAAAGGCAGGCCTTAACATACGAGGAAATTGAGGCAGAACGCGAGGAGGAAGAGACACAGGCTGACACGGAGAGTGACGATGAAGAGCAACAGATTTATAATCCCCTCAAGTTGCCTATGGGCTGGGATGGGAAGCCCATACCTTACTGGCTATACAAGCTTCATGGTCTTGGTCAGGAATTTAAATGTGAGATATGTGGTAATTATAGCTATTGGGGGCGTAGAGCTTTTGAGAGGCATTTCAAGGAATGGCGTCATCAGCACGGGATGCGTTGTCTTGGTATTCCAAATACAAAAAACTTCAACGAAATCACATCAATTGAGGAAGCAAAAGAATTGTGGAAAAGAATCCAGGAACGACAAGGACTGAACAAGTGGCGACCTGACCTTGAAGAAGAGTACGAAGACAGAGAGGGTAACATCTACAACAAGAAGACATATACTGATCTACAGCGCCAGGGATTGATATAA | 1530 | 43.99 | MSSTLLEVTRAGHEEVERLERLVVKELQNEPANSKDRLLQSHRVRNMIDSITSTTEKLVEIYEDKDIARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRRNPAARVVEANEDFEMVLKEEPVIEFSGEEAYGRYLDLHELYNQYINSKFGEPIEYAAYLDIFSQPQKIPRKLKLTRQYREYLENVLEYLIYFFQRTEPLQDLDRIFSKVETEFEERWTNGVVEGWENANQQNGHVPSAHAVIDLDYYSTLEELIELGPEKLKEALAALGLKSGGTVQQRAERLFLTKHTPLQMLDRKHFAKVLHGADRNGADAAPQQDGNLKEVALSEAKMEKLCDFLQETITHTKDNVVKRQALTYEEIEAEREEEETQADTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGLNKWRPDLEEEYEDREGNIYNKKTYTDLQRQGLI | 509 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2907183 | 2912511 | + | Conep05aG0070400.1 | Cone5ag0680 | 437698 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag0680 | 509 | Coils | Coil | 353 | 380 | - | - | |
| Cone5ag0680 | 509 | ProSiteProfiles | Zinc finger matrin-type profile. | 414 | 445 | IPR000690 | GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro) | |
| Cone5ag0680 | 509 | PANTHER | SPLICING FACTOR SF3A-RELATED | 1 | 482 | IPR051421 | GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER) | |
| Cone5ag0680 | 509 | MobiDBLite | consensus disorder prediction | 363 | 382 | - | - | |
| Cone5ag0680 | 509 | MobiDBLite | consensus disorder prediction | 361 | 382 | - | - | |
| Cone5ag0680 | 509 | Pfam | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 127 | 175 | IPR031774 | - | |
| Cone5ag0680 | 509 | Pfam | SF3a60/Prp9 C-terminal | 390 | 509 | IPR024598 | GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro) | |
| Cone5ag0680 | 509 | Pfam | Splicing factor SF3a60 binding domain | 80 | 105 | IPR021966 | - | |
| Cone5ag0680 | 509 | Pfam | Replication stress response SDE2 C-terminal | 225 | 304 | IPR025086 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag0488 | Cone-Chr11:2484017 | Cone5ag0680 | Cone-Chr5:2907183 | 3.64E-07 | wgd | |
| Cone18ag1017 | Cone-Chr18:7527919 | Cone5ag0680 | Cone-Chr5:2907183 | 3.89E-08 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag0680 | K12827 | - | mdm:103443790 | 838.565 |