Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0685 ATGGACTATGGGCGCCTTAAGCCATCAGAACCAGGAAGCTCATTCCGTTCCGACCCCCTAAACGACGCCTCTTCATCTCAAACCACACTTCCCCAAAACCGAAGGAAGAGGCTTATACTCTTTATCTCCATCTTCTCTCTCACACTGATCATCGCAGCTGCTGTCTCTGCCACTATCCTCGTATGCTTTCGGACCCGGGCTTCGGATCATCGTGGGTCAAGATACAAACCGAGCCAGGCTATTTCCAAGGCATGTAGCCGAACTCGGTATCCGGATCTCTGTGTCCACTCGCTCGTAGATTTCCCTGGCTCCCAAACCGCCAACGAGCCCGATCTCGTCCACATTTCCTTTAACATGACCCTACTCCACTTTAGCAGAGCTCTCTACTCAGCTTCTGGATTCTCTGCTGTCCAAATGGCTCCACGTGTAAAGTCCGCATACGACGACTGCCTGGAGCTCTTGGACGACTCCATCGATGCCCTCTCACGCTCGTTAAACGCAATCCTACCAGCCTCGCAGCAGTCTACTGTGTCCACACAAGACGTTCTGACATGGCTCAGCGCAGCGCTTACCAATCAAGACACGTGTATGGAAGGATTCGAGGATGTGAGCGGGACCGTTAAGGATCAGATGACGGAGAGGCTACACGACTTATCGGAGTTAGTTAGCAACTGCTTGGCTATCTTTTCCTGGAGCGCCATGGAAGAACTTTCTGGAGTGCCGATTCAGAATAAAAGAAGACTTCTAGAAGCTGATATATCGGATCAAAATCCAGAAATATCAGGAGCTTTCCCGAAATGGTTGGGTAGGAGGGACAGAGAGTTACTGAGCTCACCCGTATCTACGTTACAAGCCGATATAGTGGTGTCTCAGGATGGGAGTGACGGAGCGTATAAGACGATATCGGAGGCGATAAAGAAAGCGCCCGAGAACTGGAATAGGCGGACGATAATCTACATAAGGGCAGGAAGGTACCAAGAAGCTGATTTGAAGGTGGGAAGGAAGAAGACAAATTTGATGTTCGTCGGAGATGGGAAGGGTAAAACCATCATTGCTGGTGACAAGAGCGTCTATGATGACTTGACGACTTTCCACACCGCGGTCTTTGCGGGCAATGGAGCCGGGATAATTTTACGGGACATGACATTCGAGAACTCTGCCGGACCAAACAAGCACCAAGCGGTAGCTCTTCGTGTCGGAGCGGACCATGGTGTGGTCTATCGTTGCAGCATCGTTGGCTACCAAGACACATTATACGTGCACTCAAATCGCCAATTCTTCCGTGAATGTGACATTTACGGCACCGTAGATTTCATTTTCGGAAATGCAGCTGTCGTGTTCCAAAATTGTAACATCTTTGCTCGGAAGCCCATGGCCAACCAAAAAAACACAATCACAGCTCAAAATCGTAAGGACCCGAATCAAAACACGGGCATCTCCATCCACGCCTGTCGCATCGTTGCGACATCGGATCTCATGGCGTCCAAGGGGAGCTTCCCGACATATCTCGGTCGACCGTGGAAATTGTACTCTAGAGTGGTGTACATGTTATCATACATAGGTGATCATGTGGACCCAAAAGGTTGGTTACCATGGAATGGAGGATTTGCCTTAGACACACTATACTATGGAGAGTACCAGAATAATGGTCCGGGCGCTGCAATTGGGCAAAGGGTAAATTGGCCCGGGTATCGGGTTATCACTTCCACTGTCGAGGCGAGTAAGTTCACTGTTTCACAATTCATATACGGATCGTCATGGCTACCGTCAACCGGCGTGGCTTTCTTGGGAGGATTATGA 1800 49.83 MDYGRLKPSEPGSSFRSDPLNDASSSQTTLPQNRRKRLILFISIFSLTLIIAAAVSATILVCFRTRASDHRGSRYKPSQAISKACSRTRYPDLCVHSLVDFPGSQTANEPDLVHISFNMTLLHFSRALYSASGFSAVQMAPRVKSAYDDCLELLDDSIDALSRSLNAILPASQQSTVSTQDVLTWLSAALTNQDTCMEGFEDVSGTVKDQMTERLHDLSELVSNCLAIFSWSAMEELSGVPIQNKRRLLEADISDQNPEISGAFPKWLGRRDRELLSSPVSTLQADIVVSQDGSDGAYKTISEAIKKAPENWNRRTIIYIRAGRYQEADLKVGRKKTNLMFVGDGKGKTIIAGDKSVYDDLTTFHTAVFAGNGAGIILRDMTFENSAGPNKHQAVALRVGADHGVVYRCSIVGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCNIFARKPMANQKNTITAQNRKDPNQNTGISIHACRIVATSDLMASKGSFPTYLGRPWKLYSRVVYMLSYIGDHVDPKGWLPWNGGFALDTLYYGEYQNNGPGAAIGQRVNWPGYRVITSTVEASKFTVSQFIYGSSWLPSTGVAFLGGL 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2933931 2936826 + Conep05aG0070900.1 Cone5ag0685 437703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0685 599 PANTHER PECTINESTERASE 42 590 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone5ag0685 599 Pfam Pectinesterase 286 584 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone5ag0685 599 CDD PMEI-like_3 84 230 - -
Cone5ag0685 599 MobiDBLite consensus disorder prediction 1 29 - -
Cone5ag0685 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 230 IPR035513 -
Cone5ag0685 599 SUPERFAMILY Pectin lyase-like 281 597 IPR011050 -
Cone5ag0685 599 FunFam Pectinesterase 77 233 - -
Cone5ag0685 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 231 IPR035513 -
Cone5ag0685 599 MobiDBLite consensus disorder prediction 14 29 - -
Cone5ag0685 599 FunFam Pectinesterase 280 599 - -
Cone5ag0685 599 Pfam Plant invertase/pectin methylesterase inhibitor 80 228 IPR006501 GO:0004857(InterPro)
Cone5ag0685 599 NCBIfam pectinesterase inhibitor domain 61 231 IPR006501 GO:0004857(InterPro)
Cone5ag0685 599 ProSitePatterns Pectinesterase signature 2. 432 441 IPR033131 -
Cone5ag0685 599 Gene3D - 280 599 IPR012334 -
Cone5ag0685 599 SMART PMEI_2 76 228 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0055 Cone-Chr5:277864 Cone5ag0685 Cone-Chr5:2933931 1.19E-139 dispersed
Cone5ag0685 Cone-Chr5:2933931 Cone6ag0383 Cone-Chr6:1864724 1.46E-154 dispersed
Cone1ag0980 Cone-Chr1:54911997 Cone5ag0685 Cone-Chr5:2933931 0 wgd
Cone14ag0014 Cone-Chr14:112197 Cone5ag0685 Cone-Chr5:2933931 2.25E-288 wgd
Cone15ag0016 Cone-Chr15:125619 Cone5ag0685 Cone-Chr5:2933931 6.48E-285 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0685 - - - 0.0