Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0687 ATGGATTTGGATAGCGTGGAGTGCGTTTCATCAATAGATGGACTCGATGAAGACGAGATCCATCACCATATCAGCCCCCTTCATTCGCAGCATCCTCATCCTCATCATCACCCTGAGTTTTCAGCTTCTAAGTGTAGAAATGGCGGTAACAATATCAATCTAGCTGGTCCTACTGCCATCGCTCCTGCCACCAGCGTCCACGAGTTGCTGGAATGCCCTGTCTGCACCAATTCCATGTACCCGCCAATCCATCAGTGCCACAATGGGCATACACTTTGTTCGACCTGTAAAACAAGGGTACACAACCGCTGCCCGACTTGTCGACAAGAGCTTGGAGACATTAGGTGCTTAGCCCTAGAAAAAGTGGCAGAATCACTTGAACTGCCTTGCAAATACTACTCCTTGGGTTGCCCTGAGATATTTCCATACTACAGCAAACTCAAGCATGAGGCAATGTGCAACTTTAGACCGTACAACTGCCCTTATGCTGGATCAGAGTGCTCCGTAATTGGAGACATTCCTTTCCTTGTAGCCCATCTCAGAGATGACCACAAAGTAGACATGCACACTGGCTGCACGTTTAACCATCGGTATGTCAAGTCTAATCCTAGAGAAGTAGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGGCAATATTTCTGCCTTCACTTTGAAGCCTTCCAGCTGGGCATGGCTCCTGTCTACATGGCATTTCTCCGTTTCATGGGCGATGAGAATGAGGCTCGAAATTACAGTTATAGCCTTGAGGTGGGTGGAAATGGGCGGAAGTTAATATGGGAGGGGACCCCTCGAAGCATTCGAGATAGCCATAGAAAGGTTAGGGACAGTCATGATGGGCTGATAATTCAAAGAAACATGGCACTCTTTTTCTCAGGCGGAGACAGAAAGGAACTGAAACTGAGAGTTACGGGAAGAATATGGAAGGAACAGCAAAATCCTGATGGAGGGGTGTGTGTACCAAACCTTTGTAGTTGA 1005 47.06 MDLDSVECVSSIDGLDEDEIHHHISPLHSQHPHPHHHPEFSASKCRNGGNNINLAGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYNCPYAGSECSVIGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGGNGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCVPNLCS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2947117 2949199 - Conep05aG0071100.1 Cone5ag0687 437705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0687 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 124 IPR013083 -
Cone5ag0687 334 Pfam Sina, TRAF-like domain 216 313 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone5ag0687 334 FunFam E3 ubiquitin-protein ligase SINAT5-like 181 313 - -
Cone5ag0687 334 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 179 313 IPR008974 GO:0005515(InterPro)
Cone5ag0687 334 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Cone5ag0687 334 Pfam Sina, zinc finger 121 196 - -
Cone5ag0687 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 178 IPR013083 -
Cone5ag0687 334 SUPERFAMILY TRAF domain-like 125 317 - -
Cone5ag0687 334 CDD RING-HC_SIAHs 70 108 - -
Cone5ag0687 334 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 72 107 IPR049548 -
Cone5ag0687 334 CDD Sina 186 314 - -
Cone5ag0687 334 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 53 315 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone5ag0687 334 SUPERFAMILY RING/U-box 63 114 - -
Cone5ag0687 334 FunFam E3 ubiquitin-protein ligase SINAT3 11 123 - -
Cone5ag0687 334 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270(InterPro)
Cone5ag0687 334 FunFam E3 ubiquitin-protein ligase SINAT3 124 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0464 Cone-Chr2:2486423 Cone5ag0687 Cone-Chr5:2947117 1.26E-12 dispersed
Cone3ag0097 Cone-Chr3:554710 Cone5ag0687 Cone-Chr5:2947117 7.61E-166 dispersed
Cone5ag0480 Cone-Chr5:2021704 Cone5ag0687 Cone-Chr5:2947117 4.57E-173 dispersed
Cone5ag0687 Cone-Chr5:2947117 Cone5ag0998 Cone-Chr5:4312321 4.32E-167 dispersed
Cone1ag0982 Cone-Chr1:54923415 Cone5ag0687 Cone-Chr5:2947117 1.06E-252 wgd
Cone11ag0491 Cone-Chr11:2504830 Cone5ag0687 Cone-Chr5:2947117 9.55E-200 wgd
Cone14ag0012 Cone-Chr14:90430 Cone5ag0687 Cone-Chr5:2947117 2.41E-234 wgd
Cone15ag0013 Cone-Chr15:114500 Cone5ag0687 Cone-Chr5:2947117 1.79E-221 wgd
Cone18ag1014 Cone-Chr18:7508112 Cone5ag0687 Cone-Chr5:2947117 7.36E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0687 K04506 - mtr:11423170 634.409